9 - BioSample

9

Identifiers: BioSample: SAMN06342614; Sample name: 3102LYY; SRA: SRS1984470

Organism: respiratory tract metagenome
unclassified entries; unclassified sequences; metagenomes; organismal metagenomes

Package: MIMARKS: specimen, human-associated; version 6.0

Attributes

strain	Bacteria
isolate	not applicable
cultivar	not applicable
ecotype	not applicable
collection date	2015-07-17
broad-scale environmental context	human respiratory system
local-scale environmental context	lung
environmental medium	mucus
geographic location	USA: Minnesota, Minneapolis
host	Homo sapiens
isolation and growth condition	not applicable
latitude and longitude	44.9740 N 93.2277 W
host age	32
host disease	cystic fibrosis
host height	not collected
host sex	female
host subject id	1102
sample collection device or method	Sputocol
sample material processing	MoBio Powersoil
sample storage location	201601273
sample storage temperature	-80C
sample volume or weight for DNA extraction	0.3
smoker	no
host_genotype1	DF508
host_genotype2	DF508
16S_copies	52010.11
asthma	yes
allergies	yes
GERD	no
Prior_FESS	yes
polyps	yes
polypoid_change	no
SNOT20_total	34
sample_purulence	No
culture_pseudomonas_aeruginosa	positive
culture_staphylococcus_aureus	not collected
culture_coagulase_neg_staph	not collected
culture_achromobacter_xylosoxidans	not collected
culture_burkholderia_cepacia	not collected
culture_comments	not applicable
antibiotic_azithromycin	1
antibiotic_cayston	0
antibiotic_colistin	0
antibiotic_tobramycin	1
antibiotic_doxycycline	0
antibiotic_gentamicin	0
antibiotic_levofloxacin	1
antibiotic_ciprofloxacin	0
antibiotic_meropenem	0
antibiotic_zosyn	1
antibiotic_bactrim	0
antibiotic_clindamycin	0
antibiotic_colymycin	0
antibiotic_other	na
antibiotic_number	4
steroid_prednisone	0
steroid_fluticasone	0
medi_hypertonic_saline	0
medi_steroid_irrigation	0
medi_steroid_inhaled	0
pft_date	2015-07-16
fvc	3.44
fvc_percent	51
fev1	0.91
fev1_percent	31
fev1_fvc	84
fev1_fe6	85
fef_max_predicted	6.6
fef_max_percent	56
fef_25_75_predicted	3.24
fef_25_75_percent	10
fif_max_predicted	not collected
fif_max	not collected

Description

sputum expectorated from patient lung prior to FESS

Keywords: GSC:MIxS;MIMARKS:6.0

BioProject: PRJNA374847 respiratory tract metagenome
Retrieve all samples from this project

Submission: University of Minnesota, Sarah Lucas; 2017-02-16

Accession:: SAMN06342614
ID:: 6342614

BioProject SRA

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

9

Supplemental Content

Related information

Recent activity