ENCODE biosample ENCBS173ACT: RNA-seq on HepG2 cel... - BioSample - NCBI

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ENCODE biosample ENCBS173ACT: RNA-seq on HepG2 cells treated with an shRNA knockdown against KIAA1967. (KIAA1967_BGHLV18_16)

Identifiers: BioSample: SAMN05896944; Sample name: ENCODE biosample ENCBS173ACT; SRA: SRS1744683

Organism: Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo

Attributes

age	15 year
development stage	child
sex	male
health state	hepatocellular carcinoma
sample type	immortalized cell line
cell line	HepG2
donor ID	ENCDO000AAC
lab	Brenton Graveley, UConn

Description: Homo sapiens HepG2 immortalized cell line transiently expressing shRNA targeting CCAR2

Links: ENCBS173ACT at ENCODE
Derived from ENCODE donor ENCDO000AAC
general protocol
ENCODE dbxrefs Cellosaurus CVCL_0027

BioProject: PRJNA30709 Homo sapiens
Retrieve all samples from this project

Submission: ENCODE, ENCODE DCC; 2016-10-11

Accession:: SAMN05896944
ID:: 5896944

BioProject SRA GEO DataSets

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ENCODE biosample ENCBS173ACT: RNA-seq on HepG2 cells treated with an shRNA knock...
ENCODE biosample ENCBS173ACT: RNA-seq on HepG2 cells treated with an shRNA knockdown against KIAA1967. (KIAA1967_BGHLV18_16)

biosample
Homo sapiens MAGE family member D1 (MAGED1), transcript variant 3, mRNA
Homo sapiens MAGE family member D1 (MAGED1), transcript variant 3, mRNA
gi|52632378|ref|NM_001005332.1|

Nucleotide
Salinicola endophyticus strain CPA92 16S ribosomal RNA gene, partial sequence
Salinicola endophyticus strain CPA92 16S ribosomal RNA gene, partial sequence
gi|1272254883|gb|KY999931.1|

Nucleotide
Rattus norvegicus strain BN chromosome 5 CRA_213000034324809, whole genome shotg...
Rattus norvegicus strain BN chromosome 5 CRA_213000034324809, whole genome shotgun sequence
gi|70566733|gb|AAHX01037746.1||gnl| AHX|CRA_213000034324809

Nucleotide
Digestive System Abnormalities
Digestive System Abnormalities
Congenital structural abnormalities of the DIGESTIVE SYSTEM.<br/>Year introduced: 1998

MeSH

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