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Neisseria lactamica Y92-1009 genome

Identifiers
BioSample: SAMN05437355; Sample name: NLAC_Y92_PB; SRA: SRS1598040
Organism
Neisseria lactamica
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria
Package
MIGS: cultured bacteria/archaea, human-associated; version 6.0
Attributes
strainY92-1009
collection date2011-10
broad-scale environmental contextHuman Body
local-scale environmental contextNasopharynx
environmental mediumtissue
geographic locationUnited Kingdom: Sheffield
hostHomo sapiens
isolation and growth conditionhttp://www.ncbi.nlm.nih.gov/pubmed/25814628
latitude and longitude53 N 1 W
number of replicons1
reference for biomaterialGenome report pending
isolation sourcenasopharynx
Description

We present the high quality draft assembly of a sample of N.lactamica Y92-1009 (accession number) cell bank purified stock used to artificially induce nasopharyngeal carriage in humans. This gram negative, dipplococcoid bacterium is an organism of worldwide clinical interest due to its observed inverse carriage relationship with the meningococcus, principle agent of bacterial meningitis, in young children. The organism was originally isolated during the course of a carriage study from the nasopharynx of a young child in Ireland in 1992. This SMRT cell sequenced draft assembly consists of a single contig corrected using reads sequenced on Illumina Miseq 2000 of the same isolate.

Keywords: GSC:MIxS;MIGS:6.0

BioProject
PRJNA331097 Neisseria lactamica Y92-1009
Retrieve all samples from this project

Submission
University of Southampton, Anish Pandey; 2016-07-25
Accession:
SAMN05437355
ID:
5437355

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