Pasteurella multocida from Case Animal 175 on Day ... - BioSample

Pasteurella multocida from Case Animal 175 on Day 20

Identifiers: BioSample: SAMN04622943; Sample name: USDA-ARS-USMARC-60712; SRA: SRS3693225

Organism: Pasteurella multocida
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella

Package: Pathogen: environmental/food/other; version 1.0

Attributes

strain	USDA-ARS-USMARC-60712
collection date	2013-10-14
broad-scale environmental context	livestock-associated habitat
local-scale environmental context	feedlot
environmental medium	mucus
geographic location	USA:Kansas
host	Bos taurus
isolation and growth condition	missing
latitude and longitude	missing
number of replicons	1
reference for biomaterial	missing
chemical administration	macrolide antibiotic
estimated size	2250000
health state	alive
host age	5-7 months
host body habitat	nasopharynx
host body temperature	40.39
host disease	pneumonia
host life stage	calf
host subject id	175
host taxonomy ID	9913 (9913)
host tissue sampled	nasopharynx
miscellaneous parameter	case animal, exhibited bovine respiratory disease sign during 29 day experiment on Day 20
perturbation	calf trailer transport from from USA:TN to USA:KS occurring between day 0 and day 1, macrolide antibiotic administered day 20
sample collection device or method	nasopharyngeal swab
sample material processing	Swab samples from each nares were placed in 1 ml Amies transport medium, held at 4 C, and combined in lab to 2 ml.
sample size	2 ml
sample storage temperature	-80 C
source material identifiers	28111
collected by	missing
isolation source	missing

Description: Morbidity Day 0

BioProject: PRJNA281531
Retrieve all samples from this project

Submission: USDA-ARS-USMARC, Gregory Harhay; 2016-04-07

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
ampicillin	not defined	<=	0.25	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
ceftiofur	susceptible	<=	0.25	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
chlortetracycline	susceptible	<=	0.5	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
clindamycin	not defined	==	8	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
danofloxacin	susceptible	<=	0.12	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
enrofloxacin	susceptible	<=	0.12	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
florfenicol	susceptible	<=	0.25	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
gentamicin	not defined	==	4	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
neomycin	not defined	>	32	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
oxytetracycline	susceptible	<=	0.5	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
penicillin	susceptible	<=	0.12	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
spectinomycin	intermediate	>	64	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
sulfadimethoxine	not defined	>	256	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
tiamulin	not defined	==	4	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
tilmicosin	not defined	<=	4	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	2/32	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
tulathromycin	susceptible	<=	1	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
tylosin	not defined	==	8	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI

Accession:: SAMN04622943
ID:: 4622943

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Pasteurella multocida from Case Animal 175 on Day 20

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