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Pasteurella multocida from Case Animal 204 on Day 0

Identifiers
BioSample: SAMN04622932; Sample name: USDA-ARS-USMARC-59962; SRA: SRS3693238
Organism
Pasteurella multocida
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella
Package
Pathogen: environmental/food/other; version 1.0
Attributes
strainUSDA-ARS-USMARC-59962
collection date24-Sep-2013
broad-scale environmental contextlivestock-associated habitat
local-scale environmental contextfeedlot
environmental mediummucus
geographic locationUSA:Tennessee
hostBos taurus
isolation and growth conditionmissing
latitude and longitudemissing
number of replicons1
reference for biomaterialmissing
chemical administrationmacrolide antibiotic
estimated size2250000
health statealive
host age5-7 months
host body habitatnasopharynx
host diseasepneumonia
host life stagecalf
host subject id204
host taxonomy ID9913 (9913)
host tissue samplednasopharynx
miscellaneous parametercase animal, exhibited bovine respiratory disease sign during 29 day experiment
perturbationcalf trailer transport from from USA:TN to USA:KS occurring between day 0 and day 1, macrolide antibiotic administered day 1
sample collection device or methodnasopharyngeal swab
sample material processingSwab samples from each nares were placed in 1 ml Amies transport medium, held at 4 C, and combined in lab to 2 ml. 50 microliter of suspension was spiral plated on brain heart infusion agar for isolate recovery within 36 hours of sample collection
sample size2 ml
sample storage temperature-80 C
source material identifiers13317
collected bymissing
isolation sourcemissing
BioProject
PRJNA281531
Retrieve all samples from this project

Submission
USDA-ARS-USMARC, Gregory Harhay; 2016-04-07
Antibiogram
AntibioticResistance phenotypeMeasurement signMeasurementMeasurement unitsLaboratory typing methodLaboratory typing platformVendorLaboratory typing method version or reagentTesting standard
ampicillinnot defined<=0.25mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
ceftiofursusceptible<=0.25mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
chlortetracyclinesusceptible==2mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
clindamycinnot defined>16mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
danofloxacinsusceptible<=0.12mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
enrofloxacinsusceptible<=0.12mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
florfenicolsusceptible==0.5mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
gentamicinnot defined==4mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
neomycinnot defined>32mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
oxytetracyclineresistant>8mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
penicillinsusceptible<=0.12mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
spectinomycinintermediate>64mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
sulfadimethoxinenot defined>256mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
tiamulinnot defined==32mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
tilmicosinnot defined==32mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
trimethoprim-sulfamethoxazolenot defined<=2/32mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
tulathromycinsusceptible==2mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
tylosinnot defined==32mg/LMICSensititreTREK Diagnostic SystemsPlate: BOPO6F; Host: Cattle; Body Site: RespiratoryCLSI
Accession:
SAMN04622932
ID:
4622932

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