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Pasteurella multocida from Case Animal 245 on Day 0

Identifiers
BioSample: SAMN04622931; Sample name: USDA-ARS-USMARC-59910; SRA: SRS3693239
Organism
Pasteurella multocida
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella
Package
MIGS: cultured bacteria/archaea, host-associated; version 5.0
Attributes
strainUSDA-ARS-USMARC-59910
collection date27-Sep-2013
broad-scale environmental contextlivestock-associated habitat
local-scale environmental contextfeedlot
environmental mediummucus
geographic locationUSA:Kentucky
hostBos taurus
isolation and growth conditionmissing
latitude and longitudemissing
number of replicons1
reference for biomaterialmissing
chemical administrationmacrolide antibiotic
estimated size2250000
health statealive
host age5-7 months
host body habitatnasopharynx
host diseasepneumonia
host life stagecalf
host subject id245
host taxonomy ID9913 (9913)
host tissue samplednasopharynx
miscellaneous parametercase animal, exhibited bovine respiratory disease sign during 29 day experiment
perturbationcalf trailer transport from from USA:KY to USA:KS occurring between day 0 and day 1
sample collection device or methodnasopharyngeal swab
sample material processingSwab samples from each nares were placed in 1 ml Amies transport medium, held at 4 C, and combined in lab to 2 ml. 50 microliter of suspension was spiral plated on chocolate agar with bacitracin for isolate recovery within 36 hours of sample collection
sample size2 ml
sample storage temperature-80 C
source material identifiers13524
Description

Keywords: GSC:MIxS;MIGS:5.0

BioProject
PRJNA281531
Retrieve all samples from this project

Submission
USDA-ARS-USMARC, Gregory Harhay; 2016-04-07
Antibiogram
AntibioticResistance phenotypeMeasurement signMeasurementMeasurement unitsLaboratory typing methodLaboratory typing platformVendorLaboratory typing method version or reagentTesting standard
ampicillinnot defined<=0.25mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
ceftiofursusceptible<=0.25mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
chlortetracyclinesusceptible==2mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
clindamycinnot defined==16mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
danofloxacinsusceptible<=0.12mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
enrofloxacinsusceptible<=0.12mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
florfenicolsusceptible<=0.25mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
gentamicinnot defined==2mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
neomycinnot defined>32mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
oxytetracyclineresistant>8mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
penicillinsusceptible<=0.12mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
sulfadimethoxinenot defined>256mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
spectinomycinintermediate>64mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
tiamulinnot defined==16mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
tilmicosinnot defined<=4mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
trimethoprim-sulfamethoxazolenot defined<=2/32mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
tulathromycinsusceptible<=1mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
tylosinnot defined==8mg/LMICSensititreTREK Diagnostic SystemsBOPO6F plate; cattle host; respiratory body siteCLSI
Accession:
SAMN04622931
ID:
4622931

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