Leclercia adecarboxylata from Control Animal 259 o... - BioSample

Leclercia adecarboxylata from Control Animal 259 on Day 0

Identifiers: BioSample: SAMN04158503; Sample name: USDA-ARS-USMARC-60222

Organism: Leclercia adecarboxylata
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Leclercia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

number of replicons	1
geographic location	USA:Kentucky
environmental medium	mucus
host disease	missing
host taxonomy ID	9913 (9913)
sample storage temperature	-80 C
strain	USDA-ARS-USMARC-60222
source material identifiers	13514
host life stage	calf
health state	alive
broad-scale environmental context	livestock-associated habitat
miscellaneous parameter	control animal, no bovine respiratory disease sign for duration of 29 day experiment
local-scale environmental context	feedlot
host subject id	259
isolation source	nasopharynx
collection date	2013-09-27
sample collection device or method	nasopharyngeal swab
chemical administration	macrolide antibiotic
host age	5-7 months
latitude and longitude	missing
perturbation	calf trailer transport from from USA:KY to USA:KS occurring between day 0 and day 1, macrolide antibiotic administered day 1
reference for biomaterial	missing
sample material processing	Swab samples from each nares were placed in 1 ml Amies transport medium, held at 4 C, and combined in lab to 2 ml. 50 microliter of suspension was spiral plated on brain heart infusion agar with 1% Fildes Enrichment, 5.3 g/L yeast extract, and 8 mg/L azithromycin for isolate recovery within 36 hours of sample collection
sample size	2 ml
isolation and growth condition	missing
estimated size	5000000
collected by	missing
host	Bos taurus

Description: Keywords: GSC:MIxS;MIMARKS:4.0

BioProject: PRJNA281531
Retrieve all samples from this project

Submission: USDA-ARS-USMARC, Gregory Harhay; 2015-10-09

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
ampicillin	not defined	==	0.5	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
ceftiofur	not defined	==	0.5	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
chlortetracycline	not defined	==	1	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
clindamycin	not defined	>	16	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
danofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
enrofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
florfenicol	not defined	==	1	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
gentamicin	not defined	<=	1	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
neomycin	not defined	<=	4	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
oxytetracycline	not defined	<=	0.5	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
penicillin	not defined	==	8	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
sulfadimethoxine	not defined	<=	256	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
spectinomycin	not defined	==	16	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
tiamulin	not defined	>	32	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
tilmicosin	not defined	==	32	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	2/38	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
tulathromycin	not defined	==	4	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI
tylosin	not defined	>	32	mg/L	MIC	Sensititre	TREK Diagnostic Systems	BOPO6F plate; cattle host	CLSI

Accession:: SAMN04158503
ID:: 4158503

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Leclercia adecarboxylata from Control Animal 259 on Day 0

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