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In Vivo Rat Liver Carcinogen (COH_WANG_AC0HK2ACXX_544_TGACCA_s_3)

Identifiers
BioSample: SAMN02666198; SRA: SRS562958; GEO: GSM1336256
Organism
Rattus norvegicus (Norway rat)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Attributes
source nameLiver
tissueliver
strainSprague-Dawley
dose1800 mg/kg
sexmale
mode_of_actionPPARA
chemicalROSIGLITAZONE
vehicleCORN OIL 100 %
routeORAL GAVAGE
duration5 d
organ_or_cell_typeLIVER
animal_idS011030-046
vehicle_route_designationNU_OG
rna_id50919
rna_quality_rin9.3
sequencing_platformHiScan SQ
sequencing_date3/12/2012
read_depth21,532,876
read_length2x100 nt
average_insert_length154
ercc_spike_inMix1
ercc_mapping_ratio1.82
Links
GEO Sample GSM1336256
BioProjects
PRJNA239561 Rattus norvegicus
Retrieve all samples from this project

PRJNA208232 SEQC Project
Retrieve all samples from this project

Submission
Systems Toxicology, NCTR/FDA, Leming Shi; 2014-02-27
Accession:
SAMN02666198
ID:
2666198

BioProject SRA GEO DataSets

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