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In Vivo Rat Liver Carcinogen (COH_WANG_AC0HK2ACXX_558_GCCAAT_s_5)

Identifiers
BioSample: SAMN02666127; SRA: SRS562966; GEO: GSM1336264
Organism
Rattus norvegicus (Norway rat)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Attributes
source nameLiver
tissueliver
strainSprague-Dawley
dose.
sexmale
mode_of_actionControl
chemicalVehicle
vehicleCMC .5 %
routeORAL GAVAGE
duration5 d
organ_or_cell_typeLIVER
animal_idR030409-001
vehicle_route_designationNN_OG
rna_id98619
rna_quality_rin9.1
sequencing_platformHiScan SQ
sequencing_date3/12/2012
read_depth16,528,365
read_length2x100 nt
average_insert_length159
ercc_spike_inMix2
ercc_mapping_ratio1.67
Links
GEO Sample GSM1336264
BioProjects
PRJNA239561 Rattus norvegicus
Retrieve all samples from this project

PRJNA208232 SEQC Project
Retrieve all samples from this project

Submission
Systems Toxicology, NCTR/FDA, Leming Shi; 2014-02-27
Accession:
SAMN02666127
ID:
2666127

BioProject SRA GEO DataSets

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