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In Vivo Rat Liver Carcinogen (COH_WANG_AB0142ACXX_97922_L_PHE_NN_OG_ACAGTG_s_1)

Identifiers
BioSample: SAMN02666100; SRA: SRS562885; GEO: GSM1336184
Organism
Rattus norvegicus (Norway rat)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Attributes
source nameLiver
tissueliver
strainSprague-Dawley
dose54 mg/kg
sexmale
mode_of_actionCAR/PXR
chemicalPHENOBARBITAL
vehicleWATER 100 %
routeORAL GAVAGE
duration5 d
organ_or_cell_typeLIVER
animal_idS020115-239
vehicle_route_designationNN_OG
rna_id97922
rna_quality_rin9.7
sequencing_platformHiScan SQ
sequencing_date9/30/2011
read_depth18,269,824
read_length2x101 nt
average_insert_length179
ercc_spike_inMix1
ercc_mapping_ratio0.43
Links
GEO Sample GSM1336184
BioProjects
PRJNA239561 Rattus norvegicus
Retrieve all samples from this project

PRJNA208232 SEQC Project
Retrieve all samples from this project

Submission
Systems Toxicology, NCTR/FDA, Leming Shi; 2014-02-27
Accession:
SAMN02666100
ID:
2666100

BioProject SRA GEO DataSets

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