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LICR_ChipSeq_MEF_H3K27ac_adult-8wks

Identifiers
BioSample: SAMN01163878; SRA: SRS362017; GEO: GSM1000139
Organism
Mus musculus (house mouse)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Attributes
source nameMEF
biomaterial providerLICR lab
cell lineMEF
ageadult-8wks
ageadult-8wks
strainC57BL/6
labLICR-m
lab descriptionRen - Ludwig Institue for Cancer Research
datatypeChipSeq
datatype descriptionChromatin IP Sequencing
cell organismmouse
cell descriptionMouse Embryonic Fibroblast
cell sexM
antibodyH3K27ac
antibody antibodydescriptionrabbit polyclonal. Antibody Target: H3K27ac
antibody targetdescriptionHistone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendornameAbcam
antibody vendoridab4729
age descriptionAdult 8 weeks
age descriptionAdult 8 weeks
controlstd
control descriptionStandard input signal for most experiments.
controlidwgEncodeEM001456
labversionPooled & filtered
softwareversionMACS
strain descriptionC57 black 6, the most common inbred strain of laboratory mouse
Links
GEO Sample GSM1000139
BioProjects
PRJNA267243 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
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PRJNA215099 Mus musculus
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PRJNA63471 Mus musculus
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Submission
ENCODE DCC, ENCODE DCC; 2012-09-10
Accession:
SAMN01163878
ID:
1163878

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