MIGS Cultured Bacterial/Archaeal sample from Campy... - BioSample

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MIGS Cultured Bacterial/Archaeal sample from Campylobacter showae RM3277

Identifiers: BioSample: SAMN00000722; Sample name: HMP049-454 Sample; SRA: SRS001051

Organism: Campylobacter showae RM3277
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter showae

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

environmental medium	biological product [ENVO:02000043]
host	Homo sapiens
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
environmental package	missing
isolation source	missing
project name	Campylobacter showae RM3277
source material identifiers	CCUG 30254, ATCC 51146
investigation type	missing
reference for biomaterial	not determined
collection date	not determined
geographic location	not determined
latitude and longitude	not determined
isolation and growth condition	not determined
estimated size	2072000
strain	RM3277
number of replicons	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
sequencing method	454-GS-FLX
nucleic acid extraction	not determined
misc_param: HMP supersite	oral
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
project_type	Reference Genome
finishing strategy (depth of coverage)	Level 2: High-Quality Draft27x;33
assembly	Newbler 1.1.03.24-64-7
misc_param: HMP body site	Gingival crevices

Description

Campylobacter showae is a gram-negative, anaerobic/microaerophillic, rod-shaped bacterium isolated from the gingival crevice and uses a multiple unipolar flagella for motility. The bacterium was been associated with periodontitis.

Keywords: GSC:MIxS;MIGS:6.0