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MIGS Cultured Bacterial/Archaeal sample from Campylobacter showae RM3277

Identifiers
BioSample: SAMN00000722; Sample name: HMP049-454 Sample; SRA: SRS001051
Organism
Campylobacter showae RM3277
cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter showae
Package
MIGS: cultured bacteria/archaea; version 4.0
Attributes
environment materialbiological product [ENVO:02000043]
hostHomo sapiens
environment featurehuman-associated habitat [ENVO:00009003]
host taxonomy ID9606 (9606)
environmental packagemissing
isolation sourcemissing
project nameCampylobacter showae RM3277
source material identifiersCCUG 30254, ATCC 51146
investigation typemissing
reference for biomaterialnot determined
collection datenot determined
geographic locationnot determined
latitude and longitudenot determined
isolation and growth conditionnot determined
estimated size2072000
strainRM3277
number of repliconsnot determined
environment biometerrestrial biome [ENVO:00000446]
sequencing method454-GS-FLX
nucleic acid extractionnot determined
misc_param: HMP supersiteoral
sophttp://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
project_typeReference Genome
finishing strategy (depth of coverage)Level 2: High-Quality Draft27x;33
assemblyNewbler 1.1.03.24-64-7
misc_param: HMP body siteGingival crevices
Description

Campylobacter showae is a gram-negative, anaerobic/microaerophillic, rod-shaped bacterium isolated from the gingival crevice and uses a multiple unipolar flagella for motility. The bacterium was been associated with periodontitis.

Keywords: GSC:MIxS;MIGS:4.0

Links
Human Microbiome Project at J. Craig Venter Institute
BioProject
PRJNA31019 Campylobacter showae RM3277
Retrieve all samples from this project

Submission
JCVI; 2008-10-03
Accession:
SAMN00000722
ID:
722

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