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MIGS Cultured Bacterial/Archaeal sample from Atopobium rimae ATCC 49626

Identifiers
BioSample: SAMN00000717; Sample name: HMP017-454 Sample; SRA: SRS001045
Organism
Atopobium rimae ATCC 49626
cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium; Atopobium rimae
Package
MIGS: cultured bacteria/archaea; version 4.0
Attributes
collection datenot determined
estimated size1626000
isolation and growth conditionnot determined
hostHomo sapiens
latitude and longitudenot determined
environment biometerrestrial biome [ENVO:00000446]
investigation typemissing
environment featurehuman-associated habitat [ENVO:00009003]
host taxonomy ID9606 (9606)
project nameAtopobium rimae ATCC 49626
geographic locationnot determined
source material identifiersATCC 49626, VPI D140H-11A
environment materialbiological product [ENVO:02000043]
reference for biomaterialnot determined
number of repliconsnot determined
strainATCC 49626
environmental packagemissing
culture collectionATCC:49626
isolation sourcemissing
finishing strategy (depth of coverage)Level 6: Finished10-20x;9
project_typeReference Genome
misc_param: HMP body sitenot determined
nucleic acid extractionnot determined
assemblyNewbler 1.1.03.24-64-7
misc_param: HMP supersiteoral
sequencing methodnot determined
sophttp://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
Description

Atopobium rimae is a gram-positive, rod-shaped bacterium found in the gingival crevice and associated with periodontitis.

Keywords: GSC:MIxS;MIGS:4.0

Links
Human Microbiome Project at J. Craig Venter Institute
BioProject
PRJNA30999 Atopobium rimae ATCC 49626
Retrieve all samples from this project

Submission
JCVI; 2008-10-03
Accession:
SAMN00000717
ID:
717

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