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MIGS Cultured Bacterial/Archaeal sample from Capnocytophaga sputigena ATCC 33612

Identifiers
BioSample: SAMN00000681; Sample name: HMP015-454 Sample; SRA: SRS000995
Organism
Capnocytophaga sputigena ATCC 33612
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga sputigena
Package
MIGS: cultured bacteria/archaea; version 4.0
Attributes
collection datenot determined
estimated size2998000
isolation and growth conditionnot determined
hostHomo sapiens
latitude and longitudenot determined
environment biometerrestrial biome [ENVO:00000446]
investigation typemissing
environment featurehuman-associated habitat [ENVO:00009003]
host taxonomy ID9606 (9606)
project nameCapnocytophaga sputigena Capno, ATCC 33612
geographic locationnot determined
source material identifiersATCC 33612
environment materialbiological product [ENVO:02000043]
reference for biomaterialnot determined
number of repliconsnot determined
strainCapno
environmental packagemissing
isolation sourcemissing
finishing strategy (depth of coverage)Level 2: High-Quality Draft19x;65
project_typeReference Genome
misc_param: HMP body siteGingival crevices
nucleic acid extractionnot determined
assemblyNewbler v. 1.1.03.24-64-7
misc_param: HMP supersiteoral
sequencing method454-GS-FLX
sophttp://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
Description

Capnocytophaga sputigena is a gram-negative, rod-shaped bacterium located in the gingival crevice and associated with periodontal disease.

Keywords: GSC:MIxS;MIGS:4.0

Links
JCVI HMP Page
BioProject
PRJNA30997 Capnocytophaga sputigena ATCC 33612
Retrieve all samples from this project

Submission
JCVI; 2008-10-02
Accession:
SAMN00000681
ID:
681

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