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RUG30247

Identifiers
BioSample: SAMEA8030356; SRA: ERS5717642
Organism
uncultured Elusimicrobiales bacterium
cellular organisms; Bacteria; Elusimicrobiota; Elusimicrobia; Elusimicrobiales; environmental samples
Attributes
collection datenot collected
broad-scale environmental contextRangifer tarandus
local-scale environmental contextRumen
environmental mediumRumen contents
geographic locationFinland
investigation typemetagenome
isolation sourcemetagenome
project namePRJEB34458
sample nameReindeer_2_mag_101
ENA first public2021-02-12
ENA last update2021-02-11
ENA-CHECKLISTERC000047
External IdSAMEA8030356
INSDC center aliasTHE ROSLIN INSTITUTE
INSDC center nameTHE ROSLIN INSTITUTE
INSDC first public2021-02-12T17:28:52Z
INSDC last update2021-02-11T16:06:16Z
INSDC statuspublic
Submitter IdReindeer_2_mag_101
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareIDBA-UD
binning parameters-v -m 2000
binning softwareMetabat2
common nameuncultured Elusimicrobiales bacterium
completeness score84.8
completeness softwareCheckM
contamination score0
geographic location (latitude)67.9222
geographic location (longitude)26.5046
metagenomic sourceRangifer tarandus
sample derived fromERS3750161
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS3750161

BioProject
PRJEB34458 Metagenomic sequencing of the rumen of 4 ruminant species
Retrieve all samples from this project

Submission
EBI; 2021-02-17
Accession:
SAMEA8030356
ID:
17962246

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