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MAG AM1_bin-0028 from assembly ERS4600355

Identifiers
BioSample: SAMEA6951078; SRA: ERS4660955
Organism
uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples
Attributes
ammonium0.498919008814236
collection date2015-08-08
dissolved carbon dioxide0.036
broad-scale environmental contextlentic water body
local-scale environmental contextlake
environmental mediumwater
geographic locationFinland
investigation typemetagenome
isolation sourcelake water
methane0.355
nitrate2.2740138279394
oxygen8.55
phosphate0.021058971437717
project namemicrobes in stratified freshwaters
sample nameAM1_bin-0028
sulfate0.74
temperature19.8
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2020-06-15T04:03:55Z
ENA-LAST-UPDATE2020-06-18T09:06:34Z
External IdSAMEA6951078
INSDC center nameBILS
INSDC first public2020-06-15T04:03:55Z
INSDC last update2020-06-18T09:06:34Z
INSDC statuspublic
Submitter IdAM1_bin-0028
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit
binning parametersmin_len:1500,min_bin_size:10000,maxP:93,minS:50
binning softwaremetabat
collection datametagenome
completeness score99.9
completeness softwarecheckm
contamination score0.0
ferric iron8
ferrous iron1.6
geographic location (depth)0.5
geographic location (latitude)61.20805555555556
geographic location (longitude)25.11388888888889
gtdb_taxonomyd__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Fonsibacter
iron9.6
metagenomic OTUanoxic_mOTU_1187
metagenomic sourcelake water metagenome
regionEvo
sample derived fromERS4600355
sample ownerLeyden Fernandez
scientific_nameuncultured Alphaproteobacteria bacterium
sequencing methodNovaSeq
site nameAlinen Mustajärvi
taxonomic identity markergtdbtk followed by sourmash-lca, see publication
water environmental packagewater
BioProject
PRJEB38681
Retrieve all samples from this project

Submission
EBI; 2020-06-16
Accession:
SAMEA6951078
ID:
15262702

BioProject Nucleotide

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