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High-quality MAG for Candidatus Electrothrix laxa

Identifiers
BioSample: SAMEA14373207; SRA: ERS11967915
Organism
Candidatus Electrothrix laxa
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfobulbia; Desulfobulbales; Desulfobulbaceae; Candidatus Electrothrix
Attributes
collection date2021
broad-scale environmental contextaquatic biome
local-scale environmental contextmarine
environmental mediumsediment
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourcemarine sediment
project nameRecovery of cable bacteria and associate genomes
sample nameHOU-scMAG
ENA-CHECKLISTERC000011
INSDC center nameCenter for Microbial Communities
Submitter IdHOU-scMAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
assembly softwaremetaFlye;2.9;nano-hq
binning parametersEnsemble binning using coverage and kmer
binning softwareMetaBAT2, Vamb, MaxBin2, metaBinner, DAS Tool
completeness score92
completeness softwarecheckm
contamination score2.55
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcemarine metagenome (Taxon: 408172)
sample derived fromERS11891750,ERS11891751
scientific_nameCandidatus Electrothrix laxa
sequencing methodNanopore,Illumina
taxonomic identity markermulti-marker approach
Description

High-quality MAG for Candidatus Electrothrix laxa from marine sediment (Hou)

BioProject
PRJEB52550 Recovery of cable bacteria genomes from metagenomic samples
Retrieve all samples from this project

Submission
EBI; 2022-10-27
Accession:
SAMEA14373207
ID:
31477031

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