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Metagenome-assembled genome: SRR7299214_bin.12_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14082540; SRA: ERS11685675
Organism
uncultured Halomonas sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas; environmental samples
Attributes
collection date2015-06-15
broad-scale environmental contextEngineered
local-scale environmental contextEngineered
environmental mediumEngineered
geographic locationJamaica
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameMetagenome sequence of the microbial community from an open air leachate pond from the Riverton City dump servicing Kingston, St. Andrews, St. Catherine, and St. Thomas in Jamaica.
sample nameSRR7299214_bin.12_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14082540
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:20Z
INSDC last update2023-01-03T00:32:20Z
INSDC statuspublic
Submitter IdSRR7299214_bin.12_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.41
completeness softwareCheckM
contamination score3.63
geographic location (latitude)18.01052
geographic location (longitude)-76.85667
metagenomic sourcemetagenome
sample derived fromSAMN09401598
scientific_nameuncultured Halomonas sp.
sequencing methodIllumina MiSeq
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7299214 of study SRP150380.

BioProject
PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14082540
ID:
32559835

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