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Metagenome-assembled genome: SRR6007445_bin.124_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14082217; SRA: ERS11685353
Organism
uncultured Methanolinea sp.
cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanolinea; environmental samples
Attributes
collection date2016-07-01
broad-scale environmental contextEngineered
local-scale environmental contextEngineered
environmental mediumEngineered
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project namewe examined CIP removal and biodegradation using a sulfate-reducing upflow sludge bed (SRUSB) reactor during long-term operation. The ARGs in SRB sludge samples were also examined based on the high-throughput sequencing technique, to elucidate the possible degradation mechanism of CIP in the SRB sludge system based on the change in ARGs.
sample nameSRR6007445_bin.124_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14082217
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:30Z
INSDC last update2023-01-03T00:32:30Z
INSDC statuspublic
Submitter IdSRR6007445_bin.124_CONCOCT_v1.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score98.89
completeness softwareCheckM
contamination score0.65
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcemetagenome
sample derived fromSAMN07551449
scientific_nameuncultured Methanolinea sp.
sequencing methodIllumina HiSeq 3000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6007445 of study SRP116833.

BioProject
PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14082217
ID:
32559513

BioProject Nucleotide

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