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Metagenome-assembled genome: SRR4028141_bin.101_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14082021; SRA: ERS11685157
Organism
uncultured Alkalilimnicola sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola; environmental samples
Attributes
collection date2010-11-01
broad-scale environmental contextEngineered
local-scale environmental contextEngineered
environmental mediumEngineered
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameThermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2 metagenome
sample nameSRR4028141_bin.101_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14082021
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:29Z
INSDC last update2023-01-03T00:32:29Z
INSDC statuspublic
Submitter IdSRR4028141_bin.101_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.25
completeness softwareCheckM
contamination score3.73
geographic location (latitude)38.54027
geographic location (longitude)-121.75008
metagenomic sourcemetagenome
sample derived fromSAMN05518450
scientific_nameuncultured Alkalilimnicola sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4028141 of study SRP081806.

BioProject
PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14082021
ID:
32559317

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