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Metagenome-assembled genome: SRR3017086_bin.52_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14035894; SRA: ERS11639177
Organism
Debaryomyces hansenii CBS767
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; CUG-Ser1 clade; Debaryomycetaceae; Debaryomyces; Debaryomyces hansenii
Attributes
collection datenot provided
broad-scale environmental contextEngineered
local-scale environmental contextFood production
environmental mediumFood production
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcefood production metagenome
project nameWine is a complex beverage, comprised of thousands of metabolites that are produced through the action of yeasts and bacteria in fermenting grape must. To ensure a robust and reliable fermentation, most commercial wines are produced via inoculation with large amounts of the major wine yeast, Saccharomyces cerevisiae. However, there is a growing trend towards the use of uninoculated or “wild” fermentations, in which the yeasts and bacteria that are naturally associated with the vineyard or winery perform the fermentation. The varied metabolic contributions of the numerous non-Saccharomyces species in this microbial community are thought to impart complexity and desirable taste and aroma attributes to wild ferments when compared to their inoculated counterparts.</p><p>In order the map the microflora of spontaneous fermentation, metagenomic techniques were used to characterise and monitor the progression of fungal species in several wild fermentations. Both amplicon-based ITS phylotyping and shotgun metagenomics were used to assess community structure, in addition to the isolation, sequencing and de novo assembly of the first reference genomes for several dominant wine-associated species.
sample nameSRR3017086_bin.52_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14035894
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:12Z
INSDC last update2023-01-03T00:32:12Z
INSDC statuspublic
Submitter IdSRR3017086_bin.52_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score99.38
completeness softwareCheckM
contamination score0.21
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcefood production metagenome
sample derived fromSAMN04331397
scientific_nameDebaryomyces hansenii CBS767
sequencing methodIllumina MiSeq
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3017086 of study SRP067433.

BioProject
PRJEB51073 Large-scale analysis of novel cellular microbes from the food production biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14035894
ID:
32555500

BioProject Nucleotide

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