N-Mw13-23nov23-053

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Candidatus Pelagibacterales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; unclassified Candidatus Pelagibacterales

Attributes

broad-scale environmental context	freshwater biome
collection date	2023-11-20
environmental medium	rift lake
geographic location	Malawi
isolation source	Lake Malawi
project name	PRJEB86001
sample name	N-Mw13-23nov23-053
ENA first public	2025-06-26
ENA-CHECKLIST	ERC000047
INSDC center name	BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
INSDC status	public
Submitter Id	N-Mw13-23nov23-053
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	FLYE
binning parameters	coverage and kmer
binning software	MetaBAT, MetaBAT2, MaxBin
completeness score	99.53
completeness software	CheckM
contamination score	0.47
geographic location (latitude)	-13.9319
geographic location (longitude)	34.8179
local environmental context	freshwater lake
metagenomic source	lake water metagenome
sample derived from	ERS23657651
scientific_name	Candidatus Pelagibacterales bacterium
taxonomic identity marker	multi-marker approach

BioProject: PRJEB86001 Freshwater metagenomes from four depth profiles in a N-S transect of Lake Malawi (Malawi)
Retrieve all samples from this project

Your browsing activity is empty.

Activity recording is turned off.