N-IMU-22jan24-050

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Result Filters

Organism: Candidatus Pelagibacterales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; unclassified Candidatus Pelagibacterales

Attributes

broad-scale environmental context	freshwater biome
collection date	2024-01-22
environmental medium	reservoir
geographic location	Uruguay
isolation source	Reservoir, Represa de India Muerta
project name	PRJEB86000
sample name	N-IMU-22jan24-050
ENA first public	2025-06-26
ENA-CHECKLIST	ERC000047
INSDC center name	BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
INSDC status	public
Submitter Id	N-IMU-22jan24-050
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	FLYE
binning parameters	coverage and kmer
binning software	MetaBAT, MetaBAT2, MaxBin
completeness score	95.78
completeness software	CheckM
contamination score	1.2
geographic location (latitude)	-33.92
geographic location (longitude)	-54.2718
local environmental context	freshwater lake
metagenomic source	lake water metagenome
sample derived from	ERS23657639
scientific_name	Candidatus Pelagibacterales bacterium
taxonomic identity marker	multi-marker approach

Description: Allofontibacter sudamericanus assembled from Reservoir, Represa de India Muerta, Uruguay

BioProject: PRJEB86000 Freshwater, brackish and marine metagenomes from coastal lagoons and reservoirs and the South Atlantic Microbial Observatory in Uruguay
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