N-Balt2-05jul22-047

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Result Filters

Organism: Candidatus Pelagibacterales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; unclassified Candidatus Pelagibacterales

Attributes

broad-scale environmental context	freshwater biome
collection date	2022-07-05
environmental medium	brackish lake
geographic location	Poland
isolation source	Vistula lagoon brackish
project name	PRJEB86004
sample name	N-Balt2-05jul22-047
ENA first public	2025-06-26
ENA-CHECKLIST	ERC000047
INSDC center name	BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
INSDC status	public
Submitter Id	N-Balt2-05jul22-047
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	FLYE
binning parameters	coverage and kmer
binning software	MetaBAT, MetaBAT2, MaxBin
completeness score	96.39
completeness software	CheckM
contamination score	0
geographic location (latitude)	54.32271
geographic location (longitude)	19.42896
local environmental context	brackish lake
metagenomic source	lagoon metagenome
sample derived from	ERS23657666
scientific_name	Candidatus Pelagibacterales bacterium
taxonomic identity marker	multi-marker approach

Description: Allofontibacter oligotrophicus assembled from Vistula lagoon brackish, Poland

BioProject: PRJEB86004 Freshwater and brackish metagenomes from the Baltic Sea, the Vistula River and Vistula Lagoon in Poland
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