N-InaE-25sep22-010

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Candidatus Pelagibacterales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; unclassified Candidatus Pelagibacterales

Attributes

broad-scale environmental context	freshwater biome
collection date	2022-09-25
environmental medium	tectonic lake
geographic location	Japan
isolation source	Lake Inawashiro
project name	PRJEB86003
sample name	N-InaE-25sep22-010
ENA first public	2025-06-26
ENA-CHECKLIST	ERC000047
INSDC center name	BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
INSDC status	public
Submitter Id	N-InaE-25sep22-010
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	FLYE
binning parameters	coverage and kmer
binning software	MetaBAT, MetaBAT2, MaxBin
completeness score	98.8
completeness software	CheckM
contamination score	0
geographic location (latitude)	37.47469
geographic location (longitude)	140.0988
local environmental context	freshwater lake
metagenomic source	lake water metagenome
sample derived from	ERS23657625
scientific_name	Candidatus Pelagibacterales bacterium
taxonomic identity marker	multi-marker approach

Description: Allofontibacter universalis assembled from Lake Inawashiro, Japan

BioProject: PRJEB86003 Freshwater metagenomes from lakes in Japan
Retrieve all samples from this project

Your browsing activity is empty.

Activity recording is turned off.