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West Nile virus: Genome sequencing

Identifiers
BioSample: SAMEA116354814; SRA: ERS21415510
Organism
West Nile virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Euflavivirus; Orthoflavivirus nilense
Attributes
collection date2019-08-22
geographic locationUSA
host common namenot provided
host health statenot provided
hostCulex pipiens
host sexnot provided
host subject idnot provided
isolateSM62G-8-22-Cxp
sample capture statussurveillance for arboviruses
sample namePP_000SLA9:west-nile:Pathoplexus
ENA first public2024-11-06
ENA-CHECKLISTERC000011
INSDC center nameYale School of Public Health
INSDC statuspublic
Submitter IdPP_000SLA9:west-nile:Pathoplexus
authorsFeriancek, Nicole M.; Breban, Mallery I.; Bourgikos, Ellie; Bransfield, Angela; Armstrong, Philip M.; Vogels, Chantal B.F.; Grubaugh, Nathan D.
broker namePathoplexus
collecting institutionGrubaugh Lab, Yale University, CT, USA;Grubaugh Lab, Yale University, CT, USA
collector namenot provided
geographic location (latitude)41.04775
geographic location (longitude)-73.50605
geographic location (region and locality)Connecticut
scientific_nameWest Nile virus
Description

Automated upload of West Nile virus sequences submitted by Yale School of Public Health from Pathoplexus

BioProject
PRJEB80643 West Nile virus
Retrieve all samples from this project

Submission
EBI; 2024-11-07
Accession:
SAMEA116354814
ID:
44619919

BioProject Nucleotide

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