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West Nile virus: Genome sequencing

Identifiers
BioSample: SAMEA116354797; SRA: ERS21415493
Organism
West Nile virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Euflavivirus; Orthoflavivirus nilense
Attributes
collection date2019-08-13
geographic locationUSA
host common namenot provided
host health statenot provided
hostCulex pipiens
host sexnot provided
host subject idnot provided
isolateSW86G-8-13-Cxp
sample capture statussurveillance for arboviruses
sample namePP_000SKT9:west-nile:Pathoplexus
ENA first public2024-11-06
ENA-CHECKLISTERC000011
INSDC center nameYale School of Public Health
INSDC statuspublic
Submitter IdPP_000SKT9:west-nile:Pathoplexus
authorsFeriancek, Nicole M.; Breban, Mallery I.; Bourgikos, Ellie; Bransfield, Angela; Armstrong, Philip M.; Vogels, Chantal B.F.; Grubaugh, Nathan D.
broker namePathoplexus
collecting institutionGrubaugh Lab, Yale University, CT, USA;Grubaugh Lab, Yale University, CT, USA
collector namenot provided
geographic location (latitude)41.83785
geographic location (longitude)-72.58196666666667
geographic location (region and locality)Connecticut
scientific_nameWest Nile virus
Description

Automated upload of West Nile virus sequences submitted by Yale School of Public Health from Pathoplexus

Submission
EBI; 2024-11-07
Accession:
SAMEA116354797
ID:
44621820

BioProject Nucleotide

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