Metagenome-assembled genome: SRR17458623_binner12_... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115104802; Sample name: SRR17458623_binner12_27_1705322952; SRA: ERS17740519

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

broad-scale environmental context	water
collection date	2017-05-15
geographic location	USA
environmental medium	plastisphere
investigation type	metagenome-assembled genome
project name	NextSeq 500 sequencing: Metagenomic analyses of Mature Plastic Biofilm
isolation source	plastisphere metagenome
assembly software	metaspades_v3.15.3
sample derived from	SAMN24661207
geographic location (longitude)	-79.5 DD
binning parameters	default
contamination score	0.06 %
ENA-FIRST-PUBLIC	2024-01-15T16:34:33Z
ENA-LAST-UPDATE	2024-01-15T16:34:33Z
completeness software	CheckM2_v1.0.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Gammaproteobacteria bacterium
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker	multi-marker approach
completeness score	99.56 %
geographic location (latitude)	31.18 DD
scientific_name	uncultured Gammaproteobacteria bacterium
local environmental context	sea
metagenomic source	plastisphere metagenome
sequencing method	NextSeq 500
ENA-FIRST-PUBLIC	2024-01-15
ENA-LAST-UPDATE	2024-01-15

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR17458623 of study SRP349508.

Metagenome-assembled genome: SRR17458623_binner12_27_1705322952
Metagenome-assembled genome: SRR17458623_binner12_27_1705322952

biosample
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-be...
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE [Billgrantia tianxiuensis]
gi|1790846864|gnl|PRJNA510464|EKK97 0|gb|QHC48810.1|

Protein

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