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MAG for uncultured Alphaproteobacteria bacterium

Identifiers
BioSample: SAMEA114817246; SRA: ERS17242113
Organism
uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples
Attributes
broad-scale environmental contextFreshwater
collection date2021-06-08
environmental mediumnot collected
geographic locationDenmark
isolation sourcesediment
project nameMicroflora Danica
sample nameMFD04492.bin.c.3
ENA first public2024-12-25
ENA-CHECKLISTERC000011
External IdSAMEA114817246
INSDC center nameCenter for Microbial Communities
INSDC last update2023-12-07T09:59:38Z
INSDC statuspublic
Submitter IdMFD04492.bin.c.3
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
binning parametersEnsemble iterative binning using coverage and kmer
binning softwareMetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score99.98
completeness softwareCheckM2
contamination score0.06
geographic location (latitude)56.05543277
geographic location (longitude)9.699910829
local environmental contextStanding freshwater
metagenomic sourcesediment metagenome
sample derived fromERS14381696
scientific_nameuncultured Alphaproteobacteria bacterium
taxonomic identity markermulti-marker approach
Description

HQ MAG for uncultured Alphaproteobacteria bacterium, recovered from an environmental sample from Denmark

Submission
EBI; 2024-12-26
Accession:
SAMEA114817246
ID:
45971916

Nucleotide

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