Metagenome-assembled genome: SRR14536366_bin.12_me... - BioSample

Metagenome-assembled genome: SRR14536366_bin.12_metawrap_v1.3.0_MAG

Identifiers: BioSample: SAMEA110699774; SRA: ERS12797312

Organism: uncultured Hydrogenophaga sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga; environmental samples

Attributes

broad-scale environmental context	plant
collection date	2018-12-11
environmental medium	rhizosphere
geographic location	China
investigation type	metagenome-assembled genome
isolation source	rhizosphere metagenome
project name	Artificial microbial manipulation can suppress soil born disease through rhizosphere assemblage. Here, 16S amplicons and metagenomics of a pot experiment were used to demonstrate the rhizosphere suppression behavior under pathogen invasion.
sample name	SRR14536366_bin.12_metawrap_v1.3.0_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-24
ENA-LAST-UPDATE	2022-08-24
External Id	SAMEA110699774
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-08-24T12:18:12Z
INSDC last update	2022-08-24T12:18:12Z
INSDC status	public
Submitter Id	SRR14536366_bin.12_metawrap_v1.3.0_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3.0
broker name	EMG broker account, EMBL-EBI
completeness score	66.3
completeness software	CheckM
contamination score	1.98
geographic location (latitude)	32.02
geographic location (longitude)	118.50006
local environmental context	tomato
metagenomic source	rhizosphere metagenome
sample derived from	SAMN18928391
sequencing method	Illumina HiSeq 2000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Hydrogenophaga;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14536366 of study SRP319842.

BioProject: PRJEB55217
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Submission: EBI; 2022-08-25

Accession:: SAMEA110699774
ID:: 30496030

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Metagenome-assembled genome: SRR14536366_bin.12_metawrap_v1.3.0_MAG

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