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Metagenome-assembled genome: SRR14536365_bin.17_metawrap_v1.3.0_MAG

Identifiers
BioSample: SAMEA110699768; SRA: ERS12797306
Organism
uncultured Caldimonas sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Sphaerotilaceae; Caldimonas; environmental samples
Attributes
broad-scale environmental contextplant
collection date2018-12-11
environmental mediumrhizosphere
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcerhizosphere metagenome
project nameArtificial microbial manipulation can suppress soil born disease through rhizosphere assemblage. Here, 16S amplicons and metagenomics of a pot experiment were used to demonstrate the rhizosphere suppression behavior under pathogen invasion.
sample nameSRR14536365_bin.17_metawrap_v1.3.0_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-24
ENA-LAST-UPDATE2022-08-24
External IdSAMEA110699768
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-08-24T12:18:12Z
INSDC last update2022-08-24T12:18:12Z
INSDC statuspublic
Submitter IdSRR14536365_bin.17_metawrap_v1.3.0_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3.0
broker nameEMG broker account, EMBL-EBI
completeness score97.0
completeness softwareCheckM
contamination score0.21
geographic location (latitude)32.02
geographic location (longitude)118.50007
local environmental contexttomato
metagenomic sourcerhizosphere metagenome
sample derived fromSAMN18928392
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Schlegelella;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14536365 of study SRP319842.

BioProject
PRJEB55217
Retrieve all samples from this project

Submission
EBI; 2022-08-25
Accession:
SAMEA110699768
ID:
30496024

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