U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: SRR10754058_bin.8_metawrap_v1.3.0_MAG

Identifiers
BioSample: SAMEA110698931; SRA: ERS12796469
Organism
Ralstonia solanacearum
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia solanacearum species complex
Attributes
broad-scale environmental contextplant
collection date2017-09-27
environmental mediumrhizoplane
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcerhizoplane metagenome
project nameexplore the compositional and functional difference of soil microbiome between healthy group and tomato bacterial wilt infected group
sample nameSRR10754058_bin.8_metawrap_v1.3.0_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-24
ENA-LAST-UPDATE2022-08-24
External IdSAMEA110698931
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-08-24T12:18:11Z
INSDC last update2022-08-24T12:18:11Z
INSDC statuspublic
Submitter IdSRR10754058_bin.8_metawrap_v1.3.0_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3.0
broker nameEMG broker account, EMBL-EBI
completeness score96.15
completeness softwareCheckM
contamination score0.79
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contexttomato
metagenomic sourcerhizoplane metagenome
sample derived fromSAMN13669125
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__Ralstonia solanacearum
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR10754058 of study SRP238496.

BioProject
PRJEB55193
Retrieve all samples from this project

Submission
EBI; 2022-08-25
Accession:
SAMEA110698931
ID:
30495946

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center