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Metagenome-assembled genome: E04__bin174

Identifiers
BioSample: SAMEA110136285; SRA: ERS12235105
Organism
uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; environmental samples
Attributes
collection date2016
broad-scale environmental contexthost-associated habitat
local-scale environmental contexthost-associated habitat
environmental mediumcaecal content
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameMetaChick
sample nameE04__bin174
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2022-06-17
ENA-LAST-UPDATE2022-06-17
External IdSAMEA110136285
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2022-06-17T16:20:11Z
INSDC last update2022-06-17T16:20:11Z
INSDC statuspublic
Submitter IdE04__bin174
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.3
binning parametersMetaBAT default parameters
binning softwareMetaBAT v2.12.1
completeness score96.77
completeness softwarecheckm v1.1.3
contamination score0
geographic location (latitude)48.8583
geographic location (longitude)2.2923
geographic location (region and locality)Jouy-en-Josas
metagenomic sourcechicken gut metagenome
sample derived fromERS4542272,ERS4542273,ERS4542274,ERS4542275,ERS4542276,ERS4542277,ERS4542278,ERS4542279,ERS4542280,ERS4542281
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542272,ERS4542273,ERS4542274,ERS4542275,ERS4542276,ERS4542277,ERS4542278,ERS4542279,ERS4542280,ERS4542281

BioProject
PRJEB53581
Retrieve all samples from this project

Submission
EBI; 2022-06-18
Accession:
SAMEA110136285
ID:
29196460

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