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a 3-chlorobenzoate degrading bacterium isolated from a 3-chlorobenzoate-enriched soil sample

Identifiers
BioSample: SAMD00242017; SRA: DRS179544
Organism
Caballeronia sp. NK8
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia; unclassified Caballeronia
Package
MIGS: cultured bacteria/archaea, soil; version 6.0
Attributes
sample nameNK8
biomaterial providerNaoto Ogawa
observed biotic relationshipfree living
collection date1985
depth0.1
elevation23
encoded traits3-chlorobenzoate degradation
broad-scale environmental contextvolcanic soil
local-scale environmental contextagricultural soil
environmental mediumenriched soil
estimated size9.18
extrachromosomal elementsthe chlorocatechol ortho-cleavage pathway encoded by the tfdCDEF genes on a large plasmid (pNK8)
geographic locationJapan:Ibaraki, Tsukuba, Kannon-dai
isolation and growth condition10.1099/00221287-147-1-121
latitude and longitude36.0225 N 140.1183 E
number of replicons7
project nameAnalysis of genome sequences of Caballeronia sp. NK8
reference for biomaterial10.1099/00221287-147-1-121
relationship to oxygenaerobe
strainNK8
locus_tag_prefixNK8
Description

Keywords: GSC:MIxS;MIGS:6.0

Links
Burkholderia sp. NK8 gene for outer-membrane porin protein, complete cds
Burkholderia sp. NK8 gene for 16S rRNA
Burkholderia sp. NK8 plasmid pNK8 tfdT, tfdC, tfdD, tfdE, tfdF genes for TfdT, chlorocatechol 1,2-dioxygenase, chloromuconate cycloisomerase, dienelactone hydrolase, maleylacetate reductase, complete cds
Burkholderia sp. NK8 cat (catC, catB, catA) and cbe (cbeE, cbeR, cbeA, cbeB, cbeC, cbeD) operon, complete sequence
Culture collection; MAFF311271
BioProject
PRJDB10322 Caballeronia sp. NK8
Retrieve all samples from this project

Submission
National Agriculture and Food Research Organization; 2021-04-13
Accession:
SAMD00242017
ID:
18736016

BioProject SRA Nucleotide

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