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10677_0047_idba_bin.144

Identifiers
BioSample: SAMEA5826630; SRA: ERS3615211
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
collection datenot collected
broad-scale environmental contextBos taurus
local-scale environmental contextstomach
environmental mediumbodily fluid
geographic locationUnited Kingdom
investigation typemetagenome
isolation sourcecattle rumen
project nameMetagenomic sequencing of the rumen of 240 cattle from Scotland
sample name10677_0047_idba_bin.144
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2019-08-09T17:04:01Z
ENA-LAST-UPDATE2019-07-31T16:26:06Z
External IdSAMEA5826630
INSDC center nameTHE ROSLIN INSTITUTE
INSDC first public2019-08-09T17:04:01Z
INSDC last update2019-07-31T16:26:06Z
INSDC statuspublic
Submitter Id10677_0047_idba_bin.144
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareIDBA-UD; v1.1.3; --num_threads 16 --pre_correction --min_contig 300
binning parameterstetra-nucleotide frequencies and abundance
binning softwareMetaBAT2
completeness score96.96
completeness softwarecheckm
contamination score2.25
geographic location (latitude)55.861398
geographic location (longitude)-3.206493
metagenomic sourcebovine gut metagenome
sample derived fromERS3190351
scientific_nameuncultured bacterium
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach (checkm)
Description

Cattle rumen microbiome bin 10677_0047_idba_bin.144

Submission
EBI; 2019-08-11
Accession:
SAMEA5826630
ID:
12552855

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