Pathogen: clinical or host-associated sample from ... - BioSample

Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers: BioSample: SAMN28235850; Sample name: AR-1027; SRA: SRS12996261

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

isolate	missing
collected by	missing
collection date	missing
geographic location	USA
host	missing
host disease	missing
isolation source	missing
latitude and longitude	missing
panel_id	ESBL-18

BioProject: PRJNA835887 Escherichia sp., Klebsiella sp.
Retrieve all samples from this project

Submission: CDC, CDC HAI-Seq; 2022-05-13

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing method version or reagent	Testing standard
amikacin	susceptible	<=	1	mg/L	MIC	96-Well Plate	CLSI
ampicillin	resistant	>	32	mg/L	MIC	96-Well Plate	CLSI
ampicillin-sulbactam	resistant	>	32/16	mg/L	MIC	96-Well Plate	CLSI
aztreonam	resistant	==	16	mg/L	MIC	96-Well Plate	CLSI
cefepime	resistant	>	32	mg/L	MIC	96-Well Plate	CLSI
cefotaxime	resistant	>	64	mg/L	MIC	96-Well Plate	CLSI
cefotaxime-clavulanic acid	not defined	<=	0.25/4	mg/L	MIC	96-Well Plate	CLSI
cefoxitin	resistant	>	16	mg/L	MIC	96-Well Plate	CLSI
ceftazidime	susceptible	==	2	mg/L	MIC	96-Well Plate	CLSI
ceftazidime-avibactam	susceptible	<=	0.5/4	mg/L	MIC	96-Well Plate	CLSI
ceftazidime-clavulanic acid	not defined	<=	0.5/4	mg/L	MIC	96-Well Plate	CLSI
ceftolozane-tazobactam	susceptible	<=	0.5/4	mg/L	MIC	96-Well Plate	CLSI
ceftriaxone	resistant	>	32	mg/L	MIC	96-Well Plate	CLSI
ciprofloxacin	resistant	>	8	mg/L	MIC	96-Well Plate	CLSI
colistin	intermediate	==	1	mg/L	MIC	96-Well Plate	CLSI
doripenem	susceptible	<=	0.12	mg/L	MIC	96-Well Plate	CLSI
ertapenem	susceptible	<=	0.12	mg/L	MIC	96-Well Plate	CLSI
gentamicin	resistant	==	16	mg/L	MIC	96-Well Plate	CLSI
imipenem	susceptible	<=	0.5	mg/L	MIC	96-Well Plate	CLSI
Imipenem-EDTA-PA	not defined	<=	0.25	mg/L	MIC	96-Well Plate	CLSI
levofloxacin	resistant	>	8	mg/L	MIC	96-Well Plate	CLSI
meropenem	susceptible	<=	0.12	mg/L	MIC	96-Well Plate	CLSI
meropenem-vaborbactam	susceptible	<=	0.5/8	mg/L	MIC	96-Well Plate	CLSI
minocycline	susceptible	<=	4	mg/L	MIC	96-Well Plate	CLSI
piperacillin-tazobactam	resistant	<=	4/4	mg/L	MIC	96-Well Plate	CLSI
tetracycline	susceptible	==	4	mg/L	MIC	96-Well Plate	CLSI
tigecycline	susceptible	<=	0.5	mg/L	MIC	96-Well Plate	missing
tobramycin	susceptible	==	4	mg/L	MIC	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	resistant	>	8/152	mg/L	MIC	96-Well Plate	CLSI

Accession:: SAMN28235850
ID:: 28235850

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Pathogen: clinical or host-associated sample from Escherichia coli

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