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Leishmania infantum de novo Assembly

Identifiers
BioSample: SAMEA103972945; SRA: ERS1662113
Organism
Leishmania infantum JPCM5
cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum
Attributes
sample nameLinJ
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2018-01-11T17:02:58Z
ENA-LAST-UPDATE2020-09-17T13:22:49Z
External IdSAMEA103972945
INSDC center nameCBMSO
INSDC first public2018-01-11T17:02:58Z
INSDC last update2020-09-17T13:22:49Z
INSDC statuspublic
Submitter IdLinJ
broker nameGENGS-CBMSO
scientific_nameLeishmania infantum JPCM5
Description

In this project, we have sequenced again the genome of this strain by the use of two NGS technologies: Illumina sequencing and single-molecule, real-time sequencing (Pacific Biosciences, PacBio). Combination of both sequencing data has led to the generation of a robust assembly for the complete genome, consisting in 36 contigs, which account for the 36 chromosomes having this Leishmania species.

BioProjects
PRJEB19657 The_population_structure_of_commensal_E__coli_in_Vietnamese_children
Retrieve all samples from this project

PRJEB20254 Leishmania infantum JPCM5 de novo assembly
Retrieve all samples from this project

Submission
EBI; 2018-01-12
Accession:
SAMEA103972945
ID:
8358541

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