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14698.319; Investigating the influence of Diadematidae scuticociliatosis on host microbiome composition

Identifiers
BioSample: SAMEA116135882; SRA: ERS21171523
Organism
marine sediment metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes
Attributes
collection date2023
geographic locationVirgin Islands
depthnot collected
elevation0
broad-scale environmental contextmarine biome
local-scale environmental contextsea floor
environmental mediummarine sediment
environmental packagesediment
geographic locationUSA:US Virgin Islands
geographic locationVirgin Islands
hostnot applicable
host body habitatnot applicable
host body productnot applicable
host tissue samplednot applicable
host common namenot applicable
host subject id319
host taxonomy IDnot applicable
sample nameqiita_sid_14698:14698.319
collection dateUnknown
sample typemarine sediment
ENA first public2025-01-23
ENA-CHECKLISTERC000011
INSDC center nameUCSDMI
INSDC statuspublic
Submitter Idqiita_sid_14698:14698.319
aboral_surfaceNA
aluminum_frozenNA
animal_conditionUnknown
body_wall_rna_sample_1NA
body_wall_rna_sample_2NA
challenge_categoryUnknown
coelomic_fluid_cytology_1NA
coelomic_fluid_cytology_2NA
coelomic_fluid_rnaNA
collection_timestamp2023
collectorNA
culture_timeUnknown
dasc_qpcr_positiveUnknown
dateNA
depth_mNA
dna_extractedTRUE
empo_1Free-living
empo_2Free-living (saline)
empo_3Solid (saline)
empo_4Sediment (saline)
experimentUnknown
experiment_successUnknown
experimentalUnknown
extraction_kitZymo Fungal and Bacterial
forward_barcodeUnknown
forward_primerUnknown
gonads_rnaNA
healthNA
histopathNA
id_numberUSVI Sick 8 Sed
incubation_waterUnknown
institutionNA
intestines_rnaNA
investigator_idUnknown
jurisdictionUS Virgin Islands
latitude18.036736
loc1NA
loc10NA
loc11NA
loc12NA
loc13NA
loc14NA
loc2NA
loc3NA
loc4NA
loc5NA
loc6NA
loc7NA
loc8NA
loc9NA
locationNA
longitude-64.801704
molecular_micro_diadema_numberNA
original_sample_typesediment
physical_specimen_locationCornell University
physical_specimen_remainingFALSE
platepcr_plate4
platepico_plate6
platestorage_plate4
primer_plateUnknown
projectUnknown
qiita_sample_typemarine sediment
reverse_barcodeUnknown
reverse_primerUnknown
roundUnknown
sample_idDaE.31
scientific_namemarine sediment metagenome
site_diadema_numberNA
spines_rnaNA
tem_fecesNA
tem_gutNA
tem_testNA
temperature_cNA
wellpcr_plateG4
wellpico_plateG7
wellstorage_plateG4
Description

marine sediment sample for Diadematidae scuticociliatosis sea urchin microbiome

BioProject
PRJEB81238
Retrieve all samples from this project

Submission
EBI; 2025-01-24
Accession:
SAMEA116135882
ID:
46398385

SRA

Supplemental Content

Related information

  • SRA
    Links to SRA experiments
  • Taxonomy
    Links to Taxonomy

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