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Accession: PRJNA222257 ID: 222257

Lactobacillus

Lactobacillus Multispecies

See Genome Information for Lactobacillus fabifermentans
Genomic characterization of the genus Lactobacillus
AccessionPRJNA222257
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismLactobacillus[Taxonomy ID: 1578]
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
PublicationsSun Z et al., "Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.", Nat Commun, 2015 Sep 29;6:8322
SubmissionRegistration date: 6-Nov-2015
Shanghai Majorbio
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)20009
WGS master199
SRA Experiments162
Protein Sequences417671
Publications
PubMed1
PMC1
Other datasets
BioSample200
Assembly199
Assembly details:
Assembly levelNumber of Assemblies
157
42
199
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001437015.1ScaffoldJQBO00000000SAMN02797803
DSM 20586
GCA_001438885.1ScaffoldJQCP00000000SAMN02797791
DSM 7090
GCA_001437085.1ScaffoldJQBS00000000SAMN02797805
DSM 20623
GCA_001437035.1ScaffoldJQBU00000000SAMN02797806
DSM 20722
GCA_001437315.1ScaffoldJQBG00000000SAMN02797801
DSM 20342
GCA_001438765.1ScaffoldJQBV00000000SAMN02797807
DSM 20730
GCA_001438695.1ScaffoldJQBH00000000SAMN02797802
DSM 20349
GCA_001436965.1ScaffoldJQBL00000000SAMN02797780
DSM 20405
GCA_001436775.1ScaffoldAYZC00000000SAMN02369436
DSM 20749
GCA_001434835.1ScaffoldAZDV00000000SAMN02369485
DSM 19394
GCA_001435755.1ScaffoldAZFI00000000SAMN02369424
DSM 15836
GCA_001436945.1ScaffoldJQBK00000000SAMN02797774
DSM 15353
GCA_001433895.1ScaffoldAZCS00000000SAMN02369388
DSM 20079
GCA_001436215.1ScaffoldAYYP00000000SAMN02369373
DSM 20509
GCA_001434695.1ContigAZDI00000000SAMN02369425
DSM 15638
GCA_001434745.1ScaffoldAZDQ00000000SAMN02369426
DSM 20249
GCA_001435665.1ContigAZEP00000000SAMN02369499
DSM 11664
GCA_001436185.1ScaffoldAYYS00000000SAMN02369500
DSM 20533
GCA_001434555.1ScaffoldAZCV00000000SAMN02369421
DSM 20534
GCA_001433985.1ScaffoldAZCM00000000SAMN02369422
DSM 20531
GCA_001437365.1ScaffoldJQBQ00000000SAMN02797775
DSM 16698
GCA_001434535.1ScaffoldAYYW00000000SAMN02369389
DSM 20602
GCA_001435475.1ContigAZDK00000000SAMN02369390
DSM 16041
GCA_001434405.1ScaffoldAZFT00000000SAMN02369391
DSM 16634
GCA_001436755.1ScaffoldAYZD00000000SAMN02369378
DSM 21051
GCA_001436315.1ScaffoldAYZA00000000SAMN02369392
DSM 20655
GCA_001435375.1ScaffoldAYYZ00000000SAMN02369423
DSM 20653
GCA_001434575.1ScaffoldAZDA00000000SAMN02369366
DSM 20003
GCA_001436115.1ContigAYZQ00000000SAMN02369393
DSM 23927
GCA_001433855.1ScaffoldAZCP00000000SAMN02369420
DSM 20054
GCA_001434735.1ContigAZDM00000000SAMN02369438
DSM 20057
GCA_001436735.1ScaffoldAYZE00000000SAMN02369439
DSM 21116
GCA_001436615.1ScaffoldAYZJ00000000SAMN02369434
DSM 22697
GCA_001434915.1ScaffoldAZEF00000000SAMN02369440
DSM 19910
GCA_001433735.1ScaffoldAZCO00000000SAMN02369372
DSM 20011
GCA_001438785.1ScaffoldJQBZ00000000SAMN02797784
DSM 22408
GCA_001435055.1ScaffoldAZEW00000000SAMN02369394
DSM 14060
GCA_001435975.1ScaffoldAYYR00000000SAMN02369441
DSM 20515
GCA_001436375.1ScaffoldAZGA00000000SAMN02369442
DSM 18527
GCA_001435835.1ScaffoldAZFX00000000SAMN02369374
DSM 17758
GCA_001435425.1ScaffoldAZDC00000000SAMN02369375
DSM 20004
GCA_001433765.1ScaffoldAZCN00000000SAMN02369482
DSM 20001
GCA_001434005.1ScaffoldAZCW00000000SAMN02369387
DSM 20584
GCA_001434585.1ContigAZDB00000000SAMN02369486
JCM 15951
GCA_001438825.1ScaffoldJQCK00000000SAMN02797794
LMG 23699
GCA_001435495.1ScaffoldAZDL00000000SAMN02369367
DSM 20019
GCA_001435795.1ScaffoldAZFL00000000SAMN02369368
DSM 15996
GCA_001437485.1ScaffoldJQCG00000000SAMN02797789
DSM 26046
GCA_001437195.1ScaffoldJQAV00000000SAMN02797778
DSM 20081
GCA_001434635.1ScaffoldAZDE00000000SAMN02369369
DSM 20072
GCA_001433875.1ScaffoldAZCR00000000SAMN02369483
DSM 20074
GCA_001436095.1ScaffoldAYYK00000000SAMN02369443
DSM 20335
GCA_001434255.1ScaffoldAZEY00000000SAMN02369444
DSM 14421
GCA_001435735.1ScaffoldAZFH00000000SAMN02369395
DSM 15833
GCA_001434815.1ScaffoldAZDU00000000SAMN02369379
DSM 19284
GCA_001435245.1ScaffoldAZGC00000000SAMN02369380
DSM 18793
GCA_000498955.2ScaffoldAYGX00000000SAMN02369445
DSM 21115
GCA_001434775.1ContigAZDR00000000SAMN02369427
DSM 20184
GCA_001435875.1ScaffoldAZFY00000000SAMN02369501
DSM 18382
GCA_001436835.1ScaffoldJQAU00000000SAMN02797777
DSM 20055
GCA_001436605.1ScaffoldAYZL00000000SAMN02369446
DSM 23037
GCA_001436645.1ContigAYZI00000000SAMN02369447
DSM 22689
GCA_001437175.1ScaffoldJQAS00000000SAMN02797768
ATCC 27394
GCA_001436935.1ScaffoldJQBI00000000SAMN02797779
DSM 20350
GCA_001434095.1ContigAZDS00000000SAMN02369432
DSM 20203
GCA_001436045.1ScaffoldAZER00000000SAMN02369487
DSM 13145
GCA_001435065.1ScaffoldAZEX00000000SAMN02369428
DSM 14340
GCA_001435505.1ScaffoldAZDO00000000SAMN02369448
JCM 17355
GCA_001434975.1ScaffoldAZEL00000000SAMN02369396
DSM 10532
GCA_001434365.1ScaffoldAZFN00000000SAMN02369419
DSM 16045
GCA_001435235.1ScaffoldAZGB00000000SAMN02369449
DSM 18630
GCA_001436575.1ContigAYZO00000000SAMN02369397
DSM 23908
GCA_001436415.1ScaffoldAYZB00000000SAMN02369450
DSM 20719
GCA_001434395.1ScaffoldAZFS00000000SAMN02369488
DSM 16381
GCA_001434515.1ScaffoldAZGI00000000SAMN02369398
DSM 5661
GCA_001436325.1ScaffoldAZFW00000000SAMN02369451
DSM 16991
GCA_001434455.1ScaffoldAZGD00000000SAMN02369399
DSM 18933
GCA_001434945.1ScaffoldAZEK00000000SAMN02369370
CGMCC 1.1877
GCA_001437535.1ScaffoldJQCJ00000000SAMN02797793
LMG 22464
GCA_001434655.1ContigAZDF00000000SAMN02369502
DSM 20176
GCA_001437505.1ScaffoldJQCH00000000SAMN02797790
DSM 26202
GCA_001436125.1ScaffoldAYZP00000000SAMN02369400
DSM 23910
GCA_001436985.1ScaffoldJQBN00000000SAMN02797782
DSM 20571
GCA_001434845.1ScaffoldAZDX00000000SAMN02369452
DSM 19519
GCA_001435015.1ContigAZET00000000SAMN02369401
DSM 13335
GCA_001435775.1ScaffoldAZFK00000000SAMN02369402
DSM 15946
GCA_001437235.1ScaffoldJQBA00000000SAMN02797772
DSM 14792
GCA_001435325.1ScaffoldAZGN00000000SAMN02369403
DSM 6629
GCA_001436455.1ScaffoldAYYU00000000SAMN02369404
DSM 20557
GCA_001433975.1ContigAZCY00000000SAMN02369381
ATCC 33200
GCA_001434335.1ScaffoldAZFM00000000SAMN02369405
DSM 16043
GCA_001434195.1ScaffoldAZEM00000000SAMN02369454
DSM 10550
GCA_001435275.1ScaffoldAZGG00000000SAMN02369453
DSM 5016
GCA_001436175.1ScaffoldAYYV00000000SAMN02369455
DSM 20587
GCA_001433995.1ContigAZCX00000000SAMN02369456
JCM 15530
GCA_001438805.1ContigJQCF00000000SAMN02797788
DSM 24716
GCA_001434135.1ContigAZEB00000000SAMN02369458
DSM 19906
GCA_001434435.1ScaffoldAZFU00000000SAMN02369418
DSM 16761
GCA_001435525.1ScaffoldAZDP00000000SAMN02369459
JCM 16448
GCA_001433825.1ScaffoldAZCK00000000SAMN02369503
DSM 12361
GCA_001438685.1ScaffoldJQBT00000000SAMN02797783
DSM 20690
GCA_001436395.1ContigAZGJ00000000SAMN02369504
DSM 5705
GCA_001436535.1ScaffoldAYYH00000000SAMN02369460
DSM 20444
GCA_001437155.1ScaffoldJQAR00000000SAMN02797767
ATCC 27304
GCA_001435035.1ScaffoldAZEU00000000SAMN02369461
DSM 13343
GCA_001434275.1ScaffoldAZEZ00000000SAMN02369489
DSM 14500
GCA_001436025.1ContigAZEQ00000000SAMN02369406
DSM 13345
GCA_001436015.1ScaffoldAYYN00000000SAMN02369407
DSM 20452
GCA_001434225.1ScaffoldAZEV00000000SAMN02369505
DSM 13675
GCA_001434785.1ScaffoldAZDT00000000SAMN02369490
DSM 19117
GCA_001435815.1ContigAZFV00000000SAMN02369491
DSM 16982
GCA_001434705.1ScaffoldAZDJ00000000SAMN02369462
JCM 17158
GCA_001435555.1ScaffoldAZDZ00000000SAMN02369463
DSM 19682
GCA_001434895.1ScaffoldAZEE00000000SAMN02369464
DSM 19909
GCA_001436275.1ScaffoldAZEH00000000SAMN02369506
DSM 19972
GCA_001434315.1ScaffoldAZFE00000000SAMN02369429
DSM 15707
GCA_001434465.1ContigAZGE00000000SAMN02369408
DSM 4864
GCA_001434145.1ScaffoldAZED00000000SAMN02369465
DSM 19908
GCA_001435995.1ScaffoldAYYQ00000000SAMN02369466
DSM 23829
GCA_001435935.1ScaffoldAZGM00000000SAMN02369492
DSM 6035
GCA_001435155.1ScaffoldAZFJ00000000SAMN02369409
DSM 15945
GCA_001434055.1ContigAZCZ00000000SAMN02369467
ATCC 53295
GCA_001437515.1ScaffoldJQCI00000000SAMN02797792
LMG 11984
GCA_001435315.1ScaffoldAZGK00000000SAMN02369410
DSM 5707
GCA_001437335.1ScaffoldJQBJ00000000SAMN02797773
DSM 15352
GCA_001436385.1ContigAZGH00000000SAMN02369433
DSM 5622
GCA_001436485.1ScaffoldAYYJ00000000SAMN02369371
DSM 20258
GCA_001435115.1ScaffoldAZFD00000000SAMN02369376
DSM 15502
GCA_001435895.1ScaffoldAZFZ00000000SAMN02369507
DSM 18390
GCA_001434215.1ScaffoldAZEN00000000SAMN02369468
DSM 10551
GCA_001435445.1ScaffoldAZDH00000000SAMN02369457
DSM 13961
GCA_001434985.1ScaffoldAZES00000000SAMN02369493
DSM 13238
GCA_001434855.1ScaffoldAZDY00000000SAMN02369437
DSM 19674
GCA_001435655.1ScaffoldAZEO00000000SAMN02369508
DSM 10667
GCA_001433915.1ContigAYZN00000000SAMN02369411
DSM 23907
GCA_001437125.1ScaffoldJQCA00000000SAMN02797785
DSM 22467
GCA_001433755.1ScaffoldAZCU00000000SAMN02369484
DSM 20314
GCA_001435585.1ContigAZEC00000000SAMN02369469
DSM 12744
GCA_001435215.1ScaffoldAZFR00000000SAMN02369470
DSM 16365
GCA_001436855.1ScaffoldJQAW00000000SAMN02797770
DSM 13273
GCA_001434175.1ScaffoldAZEJ00000000SAMN02369435
CGMCC 1.2437
GCA_001438865.1ScaffoldJQCN00000000SAMN02797797
NBRC 103219
GCA_001433815.1ContigAZCL00000000SAMN02369471
KCTC 13174
GCA_001435345.1ScaffoldAZGO00000000SAMN02369494
DSM 8475
GCA_001435695.1ScaffoldAZFB00000000SAMN02369382
DSM 15354
GCA_001436255.1ScaffoldAZEI00000000SAMN02369472
DSM 19907
GCA_001436505.1ScaffoldAYYI00000000SAMN02369383
DSM 20253
GCA_001434615.1ScaffoldAZDD00000000SAMN02369412
DSM 20016
GCA_001435405.1ScaffoldAZCQ00000000SAMN02369512
DSM 20021
GCA_001435135.1ContigAZFF00000000SAMN02369495
DSM 15814
GCA_001436475.1ContigAYYL00000000SAMN02369384
DSM 20403
GCA_001435165.1ContigAZFP00000000SAMN02369413
DSM 16049
GCA_001435715.1ScaffoldAZFG00000000SAMN02369430
DSM 15831
GCA_001434065.1ContigAZDN00000000SAMN02369509
DSM 20017
GCA_001435955.1ContigAYYT00000000SAMN02369414
DSM 20555
GCA_001436035.1ScaffoldAYYM00000000SAMN02369496
DSM 20451
GCA_001437465.1ScaffoldJQCE00000000SAMN02797787
DSM 24301
GCA_001435195.1ScaffoldAZFQ00000000SAMN02369510
DSM 16230
GCA_001437055.1ScaffoldJQBW00000000SAMN02797776
DSM 17896
GCA_001437205.1ContigJQAZ00000000SAMN02797771
DSM 13344
GCA_001436805.1ScaffoldJQAT00000000SAMN02797769
ATCC BAA-66
GCA_001436555.1ScaffoldAYZR00000000SAMN02369415
DSM 24302
GCA_001436675.1ScaffoldAYZH00000000SAMN02369473
DSM 21775
GCA_001436225.1ScaffoldAYYO00000000SAMN02369377
DSM 20505
GCA_001437435.1ScaffoldJQCB00000000SAMN02797786
DSM 22696
GCA_001436595.1ScaffoldAYZM00000000SAMN02369474
DSM 23365
GCA_001435095.1ScaffoldAZFC00000000SAMN02369497
DSM 15429
GCA_001436705.1ScaffoldAYZF00000000SAMN02369475
DSM 21376
GCA_001434475.1ContigAZGF00000000SAMN02369476
DSM 5007
GCA_001435575.1ContigAZEA00000000SAMN02369477
DSM 19904
GCA_001436695.1ScaffoldAYZG00000000SAMN02369478
DSM 21401
GCA_001436135.1ScaffoldAYZK00000000SAMN02369479
DSM 22698
GCA_001434665.1ScaffoldAZDG00000000SAMN02369431
DSM 20183
GCA_001436305.1ContigAZFO00000000SAMN02369416
DSM 16047
GCA_001434935.1ScaffoldAZEG00000000SAMN02369480
DSM 19971
GCA_001436295.1ScaffoldAYYY00000000SAMN02369385
DSM 20634
GCA_001435915.1ScaffoldAZGL00000000SAMN02369417
DSM 5837
GCA_001434295.1ContigAZFA00000000SAMN02369386
DSM 14857
GCA_001435395.1ScaffoldAYYX00000000SAMN02369481
DSM 20605
GCA_001438845.1ScaffoldJQCL00000000SAMN02797795
LMG 26013
GCA_001433745.1ScaffoldAZCT00000000SAMN02369511
DSM 20178
GCA_001434115.1ScaffoldAZDW00000000SAMN02369498
DSM 19395
GCA_001437565.1ScaffoldJQCM00000000SAMN02797796
LMG 7760
GCA_001437585.1ScaffoldJQCO00000000SAMN02797808
DSM 7084
GCA_001436795.1ContigJQAQ00000000SAMN02797809
AS1.2696
GCA_001437115.1ScaffoldJQCC00000000SAMN02797813
DSM 19927
GCA_001437605.1ScaffoldJQCQ00000000SAMN02797819
DSM 23026
GCA_001438655.1ContigJQBR00000000SAMN02797811
DSM 17757
GCA_001436905.1ScaffoldJQBB00000000SAMN02797810
DSM 14800
GCA_001437255.1ContigJQBD00000000SAMN02797815
DSM 20331
GCA_001437405.1ContigJQBY00000000SAMN02797818
DSM 22301
GCA_001438725.1ContigJQBC00000000SAMN02797814
DSM 20285
GCA_001437285.1ContigJQBF00000000SAMN02797817
DSM 20336
GCA_001437075.1ContigJQBX00000000SAMN02797812
DSM 18001
GCA_001436895.1ScaffoldJQAY00000000SAMN02797800
DSM 20196
GCA_001436865.1ScaffoldJQAX00000000SAMN02797799
DSM 20190
GCA_001438705.1ScaffoldJQBP00000000SAMN02797804
DSM 20593
GCA_001437425.1ScaffoldJQCD00000000SAMN02797798
DSM 20014
GCA_001437355.1ScaffoldJQBM00000000SAMN02797781
DSM 20410
SRA Data Details
ParameterValue
Data volume, Gbases121
Data volume, Mbytes80959

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