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Accession: PRJNA28889 ID: 28889

The 1000 Genomes Project (human)

See Genome Information for Homo sapiens
The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. Specifically defined goals are (a) the discovery of single nucleotide variants at frequencies of 1% or higher in diverse populations, (b) even more comprehensive discovery (variants down to frequencies of 0.1 - 0.5%) in functional gene regions, and (c) discovery of structural variants, such as copy number variants, other insertions and deletions, and inversions, including sequence-level understanding of breakpoints. The volume of data generated by 1000genomes project is unprecedented. The data is accessible from two mirrored ftp sites at EBI and NCBI.
AccessionPRJNA28889
TypeUmbrella project (Subtype:Funding initiative)
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
Publications
SubmissionRegistration date: 2-Mar-2008
1000 Genomes Consortium
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments26701
Publications
PubMed2
PMC2
Other datasets
BioSample3059
Variation (dbVar)251404
Single Nucleotide Polymorphism (dbSNP)40806389
SRA Data Details
ParameterValue
Data volume, Gbases317,547
Data volume, Tbytes222.73
The 1000 Genomes Project encompasses the following 6 sub-projects:
Project TypeNumber of Projects
Umbrella project3
BioProject
accession
OrganismTitle
PRJNA59771Homo sapiens1000 Genomes Full Production low coverage WGS population sequencing (1000 Genomes Project)
PRJNA59773Homo sapiens1000 Genomes Full Production Exome Sequencing (1000 Genomes Project)
PRJNA61209Homo sapiensThree pilot studies for the 1000 Genomes project. (1000 Genomes Project)
Variation3
BioProject
accession
OrganismTitle
PRJNA28911Homo sapiens1000 Genomes Project Pilot 1 (low coverage sequencing of 180 Hapmap individuals from multiple populations. (1000 Genomes Project)
PRJNA28917Homo sapiens1000 Genomes Project Pilot 3. Exon re-sequencing from 1,000 genes in 1,000 individuals. (1000 Genomes Project)
PRJNA28919Homo sapiens1000 Genomes Project Pilot 2. High coverage sequencing of 2 Trios (6 individuals). (1000 Genomes Project)

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