Mycobacterium (ID 305922) - BioProject

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Accession: PRJNA305922 ID: 305922

Mycobacterium

Sequence and Analysis of Non-tuberculous Mycobacteria (NTM) strains

The objective of the proposed analysis is to characterize NTM strains representing geographically diverse TB-endemic areas with high NTM prevalence. More...

Accession	PRJNA305922
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	U19AI110819, NIAID
Submission	Registration date: 14-Dec-2015 JCVI
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	41730
WGS master	201
SRA Experiments	365
Protein Sequences	1033265
Other datasets
BioSample	206
Assembly	201

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

201
201

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001665955.1	LZMN00000000	SAMN04696134	EPI-003-04-2554_SCH2473622	Corynebacterium sp. EPI-003-04-2554_SCH2473622
GCA_001665715.1	LZMO00000000	SAMN04696137	852002-10350_SCH5691597	Gordonia sp. 852002-10350_SCH5691597
GCA_001665905.1	LZTC00000000	SAMN04696146	852002-50395_SCH5434458	Gordonia sp. 852002-50395_SCH5434458
GCA_001665745.1	LZTD00000000	SAMN04696147	852002-50816_SCH5313054-a	Gordonia sp. 852002-50816_SCH5313054-a
GCA_001665925.1	LZTE00000000	SAMN04696149	852002-50816_SCH5313054-c	Gordonia sp. 852002-50816_SCH5313054-c
GCA_001665475.1	LZMI00000000	SAMN04692014	852002-51296_SCH5728562-b	Gordonia sp. 852002-51296_SCH5728562-b
GCA_001665945.1	LZMM00000000	SAMN04634266	ICS0012	Kocuria sp. ICS0012
GCA_001665255.1	LZSH00000000	SAMN04634200	1482268.1	Mycobacteriaceae bacterium 1482268.1
GCA_001666815.1	LZIT00000000	SAMN04634210	E2978	Mycobacterium alsense
GCA_001672935.1	LZKT00000000	SAMN04634198	1137317.9	Mycobacterium alsense
GCA_001672925.1	LZKS00000000	SAMN04634199	1137369.8	Mycobacterium asiaticum
GCA_001673635.1	LZMH00000000	SAMN04634183	1275241.6	Mycobacterium asiaticum
GCA_001673365.1	LZLS00000000	SAMN04634167	1165133.8	Mycobacterium asiaticum
GCA_001673345.1	LZLR00000000	SAMN04634168	1245335.1	Mycobacterium asiaticum
GCA_001673315.1	LZLQ00000000	SAMN04634169	1245139.5	Mycobacterium asiaticum
GCA_001673165.1	LZLF00000000	SAMN05202163	1337463.1	Mycobacterium asiaticum
GCA_001669345.1	LZLM00000000	SAMN04634178	1276495.2	Mycobacterium asiaticum
GCA_001668675.1	LZKQ00000000	SAMN05202170	1081914.2	Mycobacterium asiaticum
GCA_001953985.1	MBEI00000000	SAMN04634270	NS-7390	Mycobacterium colombiense
GCA_001954115.1	MBEP00000000	SAMN04634277	IS-576	Mycobacterium colombiense
GCA_001954075.1	MBEO00000000	SAMN04634276	IS-2214	Mycobacterium colombiense
GCA_001954055.1	MBEN00000000	SAMN04634275	IS-1176	Mycobacterium colombiense
GCA_001667905.1	LZJS00000000	SAMN04634223	E2464	Mycobacterium colombiense
GCA_001673195.1	LZLH00000000	SAMN04634160	1245197.5	Mycobacterium colombiense
GCA_001673175.1	LZLG00000000	SAMN04634161	1164983.0	Mycobacterium colombiense
GCA_001673085.1	LZLA00000000	SAMN04634153	1165916.7	Mycobacterium colombiense
GCA_001673075.1	LZKZ00000000	SAMN04634154	1245829.5	Mycobacterium colombiense
GCA_001673505.1	LZMA00000000	SAMN04634191	1137323.0	Mycobacterium colombiense
GCA_001673015.1	LZKX00000000	SAMN05202162	1245759.5	Mycobacterium colombiense
GCA_001673005.1	LZKW00000000	SAMN04634156	1211504.4	Mycobacterium colombiense
GCA_001672755.1	LZKI00000000	SAMN04634246	E1334	Mycobacterium colombiense
GCA_001665835.1	LZSX00000000	SAMN04691980	852002-51834_SCH5396731	Mycobacterium colombiense
GCA_001673475.1	LZLX00000000	SAMN04634194	1275229.4	Mycobacterium gordonae
GCA_001673255.1	LZLK00000000	SAMN05202166	1245695.6	Mycobacterium gordonae
GCA_001675225.1	MAEM00000000	SAMN05202167	1245752.6	Mycobacterium gordonae
GCA_001686655.1	MBDX00000000	SAMN04634182	1099801.4	Mycobacterium intracellulare subsp. yongonense
GCA_001686645.1	MBDZ00000000	SAMN04634227	E3170	Mycobacterium intracellulare subsp. yongonense
GCA_001667705.1	LZJT00000000	SAMN04634222	E2190	Mycobacterium intracellulare
GCA_001667655.1	LZJO00000000	SAMN04634228	E3191	Mycobacterium intracellulare
GCA_001667355.1	LZIO00000000	SAMN04692027	852002-53206_SCH5915646	Mycobacterium intracellulare
GCA_001667525.1	LZHY00000000	SAMN04634263	ACS1160	Mycobacterium kubicae
GCA_001673455.1	LZLW00000000	SAMN04634195	1146974.2	Mycobacterium kubicae
GCA_001672775.1	LZKJ00000000	SAMN04634245	E861	Mycobacterium kyorinense
GCA_001499925.1	LQIR00000000	SAMN04349498	IS-1744	Mycobacterium lehmannii
GCA_001686825.1	MBEC00000000	SAMN04634213	E896	Mycobacterium malmoense
GCA_001686745.1	MBEE00000000	SAMN04634215	E3012	Mycobacterium malmoense
GCA_001686725.1	MBEB00000000	SAMN05202171	E826	Mycobacterium malmoense
GCA_001686735.1	MBED00000000	SAMN04634214	E1298	Mycobacterium malmoense
GCA_001686665.1	MBEA00000000	SAMN04634212	E614	Mycobacterium malmoense
GCA_001667695.1	LZJU00000000	SAMN04634221	E152	Mycobacterium mantenii
GCA_001667865.1	LZJP00000000	SAMN04634226	E3121	Mycobacterium mantenii
GCA_001667835.1	LZJV00000000	SAMN04634220	E3078	Mycobacterium mantenii
GCA_001667995.1	LZJQ00000000	SAMN04634225	E2660	Mycobacterium mantenii
GCA_001673235.1	LZLI00000000	SAMN04634159	1165549.7	Mycobacterium marseillense
GCA_001672575.1	LZJY00000000	SAMN04634217	E2838	Mycobacterium scrofulaceum
GCA_001667885.1	LZJW00000000	SAMN04634219	E3039	Mycobacterium scrofulaceum
GCA_001673535.1	LZLY00000000	SAMN04634193	1081908.1	Mycobacterium sp. 1081908.1
GCA_001665235.1	LZSC00000000	SAMN04634185	1100029.7	Mycobacterium sp. 1100029.7
GCA_001665395.1	LZSG00000000	SAMN05202168	1164966.3	Mycobacterium sp. 1164966.3
GCA_001668575.1	LZMD00000000	SAMN04634188	1164985.4	Mycobacterium sp. 1164985.4
GCA_001673555.1	LZMB00000000	SAMN04634190	1165178.9	Mycobacterium sp. 1165178.9
GCA_001673415.1	LZLU00000000	SAMN04634197	1165196.3	Mycobacterium sp. 1165196.3
GCA_001673405.1	LZLV00000000	SAMN04634196	1245111.1	Mycobacterium sp. 1245111.1
GCA_001673615.1	LZMG00000000	SAMN04634184	1245499	Mycobacterium sp. 1245499.0
GCA_001673055.1	LZKY00000000	SAMN04634155	1245801.1	Mycobacterium sp. 1245801.1
GCA_001672915.1	LZKR00000000	SAMN05202169	1245805.9	Mycobacterium sp. 1245805.9
GCA_001669335.1	LZLL00000000	SAMN05202165	1245852.3	Mycobacterium sp. 1245852.3
GCA_001668625.1	LZLJ00000000	SAMN04634181	1274756.6	Mycobacterium sp. 1274756.6
GCA_001668615.1	LZMC00000000	SAMN04634189	1274761	Mycobacterium sp. 1274761.0
GCA_001673155.1	LZLE00000000	SAMN05202164	1423905.2	Mycobacterium sp. 1423905.2
GCA_001672975.1	LZKU00000000	SAMN04634158	1465703	Mycobacterium sp. 1465703.0
GCA_001672995.1	LZKV00000000	SAMN04634157	1482292.6	Mycobacterium sp. 1482292.6
GCA_001665295.1	LZSE00000000	SAMN04634179	1554424.7	Mycobacterium sp. 1554424.7
GCA_001667315.1	LZHT00000000	SAMN04696135	852002-10029_SCH5224772	Mycobacterium sp. 852002-10029_SCH5224772
GCA_001665645.1	LZSZ00000000	SAMN04696142	852002-30065_SCH5024008	Mycobacterium sp. 852002-30065_SCH5024008
GCA_001665875.1	LZTA00000000	SAMN04696143	852002-40037_SCH5390672	Mycobacterium sp. 852002-40037_SCH5390672
GCA_001667185.1	LZIC00000000	SAMN04696148	852002-50816_SCH5313054-b	Mycobacterium sp. 852002-50816_SCH5313054-b
GCA_001667035.1	LZIR00000000	SAMN04692007	852002-51057_SCH5723018	Mycobacterium sp. 852002-51057_SCH5723018
GCA_001667105.1	LZIK00000000	SAMN04696151	852002-51152_SCH6134967	Mycobacterium sp. 852002-51152_SCH6134967
GCA_001667115.1	LZIJ00000000	SAMN04696152	852002-51163_SCH5372311	Mycobacterium sp. 852002-51163_SCH5372311
GCA_001667425.1	LZII00000000	SAMN04691946	852002-51613_SCH5001154	Mycobacterium sp. 852002-51613_SCH5001154
GCA_001667455.1	LZIG00000000	SAMN05202175	852002-51759_SCH5129042	Mycobacterium sp. 852002-51759_SCH5129042
GCA_001665535.1	LZSQ00000000	SAMN04691954	852002-51961_SCH5331710	Mycobacterium sp. 852002-51961_SCH5331710
GCA_001667145.1	LZIF00000000	SAMN04691956	852002-51971_SCH5477799-a	Mycobacterium sp. 852002-51971_SCH5477799-a
GCA_001667155.1	LZIE00000000	SAMN04691965	852002-53434_SCH5985345	Mycobacterium sp. 852002-53434_SCH5985345
GCA_001665685.1	LZTB00000000	SAMN04696145	852013-50091_SCH5140682	Mycobacterium sp. 852013-50091_SCH5140682
GCA_001665575.1	LZSU00000000	SAMN04691969	852013-51886_SCH5428379	Mycobacterium sp. 852013-51886_SCH5428379
GCA_001665605.1	LZSV00000000	SAMN04691973	852014-50255_SCH5639931	Mycobacterium sp. 852014-50255_SCH5639931
GCA_001665615.1	LZSW00000000	SAMN04691977	852014-52144_SCH5372336	Mycobacterium sp. 852014-52144_SCH5372336
GCA_001667075.1	LZIL00000000	SAMN04692044	852014-52450_SCH5900713	Mycobacterium sp. 852014-52450_SCH5900713
GCA_001667505.1	LZHZ00000000	SAMN04634262	ACS1612	Mycobacterium sp. ACS1612
GCA_001667275.1	LZHV00000000	SAMN04634268	ACS4054	Mycobacterium sp. ACS4054
GCA_001667265.1	LZHW00000000	SAMN04634265	ACS4331	Mycobacterium sp. ACS4331
GCA_001666755.1	LZJC00000000	SAMN04634238	E1214	Mycobacterium sp. E1214
GCA_001667745.1	LZJL00000000	SAMN04634231	E1319	Mycobacterium sp. E1319
GCA_001666865.1	LZJE00000000	SAMN04634236	E136	Mycobacterium sp. E136
GCA_001672745.1	LZKH00000000	SAMN04634247	E1386	Mycobacterium sp. E1386
GCA_001667625.1	LZJJ00000000	SAMN05202172	E1715	Mycobacterium sp. E1715
GCA_001667775.1	LZJI00000000	SAMN04634233	E1747	Mycobacterium sp. E1747
GCA_001667735.1	LZJN00000000	SAMN04634229	E183	Mycobacterium sp. E183
GCA_001666935.1	LZIY00000000	SAMN04634241	E188	Mycobacterium sp. E188
GCA_001672665.1	LZKF00000000	SAMN04634249	E2238	Mycobacterium sp. E2238
GCA_001672675.1	LZKE00000000	SAMN04634250	E2327	Mycobacterium sp. E2327
GCA_001672685.1	LZKC00000000	SAMN04634252	E2462	Mycobacterium sp. E2462
GCA_001667925.1	LZJR00000000	SAMN04634224	E2479	Mycobacterium sp. E2479
GCA_001668695.1	LZKD00000000	SAMN04634251	E2497	Mycobacterium sp. E2497
GCA_001666745.1	LZJH00000000	SAMN04634234	E2699	Mycobacterium sp. E2699
GCA_001667585.1	LZJZ00000000	SAMN04634216	E2733	Mycobacterium sp. E2733
GCA_001667595.1	LZJX00000000	SAMN04634218	E2989	Mycobacterium sp. E2989
GCA_001667015.1	LZIS00000000	SAMN04634211	E3198	Mycobacterium sp. E3198
GCA_001667785.1	LZJG00000000	SAMN05202173	E3247	Mycobacterium sp. E3247
GCA_001666835.1	LZJF00000000	SAMN04634235	E3251	Mycobacterium sp. E3251
GCA_001666895.1	LZJB00000000	SAMN05202174	E3298	Mycobacterium sp. E3298
GCA_001666785.1	LZJA00000000	SAMN04634239	E3305	Mycobacterium sp. E3305
GCA_001666915.1	LZIZ00000000	SAMN04634240	E3339	Mycobacterium sp. E3339
GCA_001667665.1	LZJM00000000	SAMN04634230	E342	Mycobacterium sp. E342
GCA_001666955.1	LZIX00000000	SAMN04634242	E735	Mycobacterium sp. E735
GCA_001672895.1	LZKP00000000	SAMN04634201	E740	Mycobacterium sp. E740
GCA_001668725.1	LZKL00000000	SAMN04634243	E787	Mycobacterium sp. E787
GCA_001672815.1	LZKK00000000	SAMN04634244	E796	Mycobacterium sp. E796
GCA_001666875.1	LZJD00000000	SAMN04634237	E802	Mycobacterium sp. E802
GCA_001499855.1	LQIK00000000	SAMN04349491	GA-0227b	Mycobacterium sp. GA-0227b
GCA_001500045.1	LQIX00000000	SAMN04349504	GA-1199	Mycobacterium sp. GA-1199
GCA_001499905.1	LQIS00000000	SAMN04349499	GA-1285	Mycobacterium sp. GA-1285
GCA_001954135.1	MBEQ00000000	SAMN04634278	GA-1841	Mycobacterium sp. GA-1841
GCA_001500145.1	LQIL00000000	SAMN04349492	GA-1999	Mycobacterium sp. GA-1999
GCA_001499965.1	LQIT00000000	SAMN04349500	GA-2829	Mycobacterium sp. GA-2829
GCA_001954195.1	MBES00000000	SAMN04634282	IS-1264	Mycobacterium sp. IS-1264
GCA_001499995.1	LQIU00000000	SAMN04349501	IS-1496	Mycobacterium sp. IS-1496
GCA_001499985.1	LQIM00000000	SAMN04349493	IS-1556	Mycobacterium sp. IS-1556
GCA_001500025.1	LQIW00000000	SAMN04349503	IS-1590	Mycobacterium sp. IS-1590
GCA_001500125.1	LQIV00000000	SAMN04349502	IS-1742	Mycobacterium sp. IS-1742
GCA_001954215.1	MBET00000000	SAMN04634283	IS-2888	Mycobacterium sp. IS-2888
GCA_001500065.1	LQIN00000000	SAMN04349494	IS-3022	Mycobacterium sp. IS-3022
GCA_001954275.1	MBEU00000000	SAMN04634285	IS-836	Mycobacterium sp. IS-836
GCA_001953975.1	MBEJ00000000	SAMN04634271	NS-7484	Mycobacterium sp. NS-7484
GCA_001954045.1	MBEM00000000	SAMN04634274	SP-6446	Mycobacterium sp. SP-6446
GCA_001673125.1	LZLD00000000	SAMN04634162	1337842.4	Mycobacterium tuberculosis
GCA_001673395.1	LZLT00000000	SAMN04634165	1337782.3	Mycobacterium tuberculosis
GCA_001953995.1	MBEL00000000	SAMN04634273	NS-7503	Mycolicibacter heraklionensis
GCA_001673575.1	LZME00000000	SAMN04634187	1211594.5	Mycolicibacter heraklionensis
GCA_001673105.1	LZLB00000000	SAMN04634164	1245976.6	Mycolicibacter heraklionensis
GCA_001672655.1	LZKB00000000	SAMN04634253	E2548	Mycolicibacter heraklionensis
GCA_001666995.1	LZIU00000000	SAMN04634209	E2853	Mycolicibacter heraklionensis
GCA_001667395.1	LZIM00000000	SAMN04692039	852014-51077_SCH5608930-b	Mycolicibacter sinensis
GCA_001667375.1	LZIN00000000	SAMN04692035	852014-51077_SCH5608930-a	Mycolicibacter sinensis
GCA_001667945.1	LZJK00000000	SAMN04634232	E1572	Mycolicibacter sinensis
GCA_001672735.1	LZKG00000000	SAMN04634248	E1876	Mycolicibacter sinensis
GCA_001673565.1	LZMF00000000	SAMN04634186	1274684.2	Mycolicibacter sinensis
GCA_001500105.1	LQIP00000000	SAMN04349496	GA-1379	Mycolicibacterium acapulense
GCA_001500085.1	LQIQ00000000	SAMN04349497	GA-1683	Mycolicibacterium acapulense
GCA_001499915.1	LQIO00000000	SAMN04349495	GA-1331	Mycolicibacterium acapulense
GCA_001667065.1	LZIQ00000000	SAMN04692011	852002-51296_SCH5728562-a	Mycolicibacterium celeriflavum
GCA_001954125.1	MBGE00000000	SAMN04634279	GA-1041	Mycolicibacterium conceptionense
GCA_001954235.1	MBGG00000000	SAMN04634284	IS-2586	Mycolicibacterium conceptionense
GCA_001954205.1	MBGF00000000	SAMN04634281	IS-1222	Mycolicibacterium conceptionense
GCA_001667305.1	LZHU00000000	SAMN04634269	ACS4694	Mycolicibacterium conceptionense
GCA_001667235.1	LZHX00000000	SAMN04634264	ACS1953	Mycolicibacterium conceptionense
GCA_001667225.1	LZIA00000000	SAMN04634258	ACS2995	Mycolicibacterium conceptionense
GCA_001667965.1	LZKA00000000	SAMN04634254	ACS2998	Mycolicibacterium conceptionense
GCA_001673265.1	LZLN00000000	SAMN04634177	1165613.5	Mycolicibacterium conceptionense
GCA_001665335.1	LZSK00000000	SAMN04634256	ACS2738	Mycolicibacterium conceptionense
GCA_001665365.1	LZSD00000000	SAMN04634166	1477680.9	Mycolicibacterium elephantis
GCA_001665755.1	LZSM00000000	SAMN04691997	852014-51730_SCH5271717	Mycolicibacterium elephantis
GCA_001667535.1	LZHS00000000	SAMN04696136	852002-10318_SCH4845932	Mycolicibacterium elephantis
GCA_001954145.1	MBER00000000	SAMN04634280	GA-0871	Mycolicibacterium fortuitum
GCA_001954035.1	MBEK00000000	SAMN04634272	NS-7455	Mycolicibacterium fortuitum
GCA_001667345.1	LZIP00000000	SAMN04692022	852002-51564_SCH6189132-b	Mycolicibacterium fortuitum
GCA_001667445.1	LZIH00000000	SAMN04691950	852002-51695_SCH5383401	Mycolicibacterium fortuitum
GCA_001666985.1	LZIV00000000	SAMN04634208	E1141	Mycolicibacterium fortuitum
GCA_001673275.1	LZLO00000000	SAMN04634176	1089381.4	Mycolicibacterium fortuitum
GCA_001673325.1	LZLP00000000	SAMN04634170	1165541.1	Mycolicibacterium fortuitum
GCA_001673485.1	LZLZ00000000	SAMN04634192	1242461.0	Mycolicibacterium fortuitum
GCA_001672855.1	LZKM00000000	SAMN04634205	E2378	Mycolicibacterium fortuitum
GCA_001672845.1	LZKO00000000	SAMN04634202	E3337	Mycolicibacterium fortuitum
GCA_001672835.1	LZKN00000000	SAMN04634204	E2981	Mycolicibacterium fortuitum
GCA_001665795.1	LZSR00000000	SAMN04691959	852002-53395_SCH5661144-a	Mycolicibacterium fortuitum
GCA_001665545.1	LZSS00000000	SAMN04691961	852002-53395_SCH5661144-b	Mycolicibacterium fortuitum
GCA_001665455.1	LZSN00000000	SAMN04692001	852014-51789_SCH5646012	Mycolicibacterium fortuitum
GCA_001666795.1	LZIW00000000	SAMN04634207	E190	Mycolicibacterium fortuitum
GCA_001665315.1	LZSI00000000	SAMN04634203	E3377	Mycolicibacterium fortuitum
GCA_001665415.1	LZSJ00000000	SAMN04634206	E1336	Mycolicibacterium fortuitum
GCA_001665825.1	LZST00000000	SAMN04856196	852013-50142_SCH4511227	Mycolicibacterium monacense
GCA_001667465.1	LZID00000000	SAMN04696138	852002-10379_SCH5584320	Mycolicibacterium monacense
GCA_001668705.1	LZLC00000000	SAMN04634163	1127319.6	Mycolicibacterium mucogenicum
GCA_001665375.1	LZSF00000000	SAMN04634180	1199456.5	Mycolicibacterium mucogenicum
GCA_001499835.1	LQIH00000000	SAMN04339709	GA-2613	Mycolicibacterium novocastrense
GCA_001499825.1	LQII00000000	SAMN04349489	GA-2617	Mycolicibacterium novocastrense
GCA_001499845.1	LQIJ00000000	SAMN04349490	GA-2945b	Mycolicibacterium novocastrense
GCA_001665785.1	LZSO00000000	SAMN04696154	852002-51209_SCH5440388	Mycolicibacterium peregrinum
GCA_001665625.1	LZSY00000000	SAMN04696139	852002-10433_SCH5171157	Mycolicibacterium peregrinum
GCA_001667205.1	LZIB00000000	SAMN04634257	ACS819	Mycolicibacterium peregrinum
GCA_001686675.1	MBDY00000000	SAMN04634255	ACS3670	Mycolicibacterium porcinum
GCA_001665445.1	LZSL00000000	SAMN04691993	852014-10208_SCH5295773	Mycolicibacterium setense
GCA_001686755.1	MBEF00000000	SAMN04634259	ACS5020	Mycolicibacterium vulneris
GCA_001686835.1	MBEG00000000	SAMN04634260	ICS2043	Mycolicibacterium vulneris
GCA_001686845.1	MBEH00000000	SAMN04634267	ACS4093	Mycolicibacterium vulneris
GCA_001665865.1	LZMK00000000	SAMN04696140	852002-20019_SCH5090214	Nocardia sp. 852002-20019_SCH5090214
GCA_001665695.1	LZML00000000	SAMN04696150	852002-51101_SCH5132738	Nocardia sp. 852002-51101_SCH5132738
GCA_001665525.1	LZSP00000000	SAMN04691940	852002-51244_SCH5132740	Nocardia sp. 852002-51244_SCH5132740
GCA_001665495.1	LZMJ00000000	SAMN04692018	852002-51564_SCH6189132-a	Rhodococcus sp. 852002-51564_SCH6189132-a

SRA Data Details

Parameter	Value
Data volume, Gbases	245
Data volume, Tbytes	0.11

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Mycobacterium

Sequence and Analysis of Non-tuberculous Mycobacteria (NTM) strains

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