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Accession: PRJNA152995 ID: 152995

Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells

Genome-wide analysis of histone modification (H2AZ, H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me2, H3K4me3 and H3K9me3), protein-DNA binding (TAF1, P300, Pou5f1 and Nanog), cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells We generated histone modification data (H2AZ, H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me2, H3K4me3 and H3K9me3) and protein-DNA binding data (TAF1, P300, Pou5f1 and Nanog) using Chromatin Immunoprecipitation followed by short sequencing (ChIP-seq), cytosine methylation data using methylated DNA immunoprecipitation followed by sequencing (MeDIP-seq) and DNA digestion by methyl-sensitive restriction enzymes followed by sequencing (MRE-seq), transcriptome data with RNA short sequencing (RNA-seq) in human embryonic stem cells, mouse embryonic stem cells, pig induced pluripotent stem cells and mouse embryonic stem cells under activin-A-induced-differentiation. More...
AccessionPRJNA152995; GEO: GSE36114
ScopeMultispecies
PublicationsXiao S et al., "Comparative epigenomic annotation of regulatory DNA.", Cell, 2012 Jun 8;149(6):1381-92
SubmissionRegistration date: 27-Feb-2012
Dr. Sheng Zhong, Bioengineering, University of California San Diego
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments47
Publications
PubMed1
PMC1
Other datasets
BioSample47
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes22025
SRA Data Details
ParameterValue
Data volume, Gbases118
Data volume, Mbytes76468

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