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Accession: PRJNA20823 ID: 20823

Iron Mountain Acid Mine Drainage Project

Acid Mine Drainage Metagenomes from Multiple Locations on Iron Mountain

Samples of biofilms associated acid mine drainage were collected from the Richmond Mine, Iron Mountain, CA. Iron Mountain is located at 40 deg 40' 38.42'' N and 122 deg 31' 19.90'' W (elevation ~ 3,100 ft).
AccessionPRJNA20823
TypeUmbrella Metagenome project (Subtype:Metagenome)
Organismmine drainage metagenome[Taxonomy ID: 410659]
unclassified sequences; metagenomes; ecological metagenomes; mine drainage metagenome
PublicationsDenef VJ et al., "AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.", ISME J, 2010 Feb 18;4(5):599-610
SubmissionRegistration date: 20-Sep-2007
DOE Joint Genome Institute
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)5515
WGS master20
Genomic DNA41
SRA Experiments43
Capillary Traces (Trace Archive)1
Protein Sequences25720
Publications
PubMed16
PMC9
Other datasets
BioSample47
Assembly12
SRA Data Details
ParameterValue
Data volume, Gbases123
Data volume, Mbytes84499
Iron Mountain Acid Mine Drainage Project encompasses the following 8 sub-projects:
Project TypeNumber of Projects
Umbrella Metagenome project6
BioProject
accession
OrganismTitle
PRJNA63549mine drainage metagenome5-way (FS) Acid Mine Drainage Biofilm Metagenome (University of California...)
PRJNA81101mine drainage metagenomeBiofilm microbial community from 5-way (CG) acid mine drainage site at Iron Mountain, California. (DOE Joint Genome Institute)
PRJNA163501mine drainage metagenomeBiofilm microbial community from UBA acid mine drainage site at Iron Mountain, California. (DOE Joint Genome Institute)
PRJNA208475mine drainage metagenomeCombined UBA and UBA BS acid mine drainage biofilm metagenome (University of California...)
PRJNA208477mine drainage metagenomeRichmond Mine AMD Samples Metagenome (University of California,...)
List all 6 'Umbrella Metagenome project' projects...
metagenome1
BioProject
accession
OrganismTitle
PRJNA29439mine drainage metagenomeUBA BS acid mine drainage biofilm metagenome (UC Berkeley)
transcriptome1
BioProject
accession
OrganismTitle
PRJNA210320mine drainage metagenomeRichmond Mine Acid Mine Drainage Transcriptome or Gene expression (University of California...)

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