ID 529587 - BioProject

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Accession: PRJNA529587 ID: 529587

ESBL-Kp genomes from neonates

We investigated, using whole genome sequencing, three parallel ESBL-KP outbreaks in different neonatal intensive care units (NICUs) in close geographical proximity. More...

Accession	PRJNA529587
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Rakovitsky N et al., "Fourier Transform Infrared Spectroscopy Is a New Option for Outbreak Investigation: a Retrospective Analysis of an Extended-Spectrum-Beta-Lactamase-Producing Klebsiella pneumoniae Outbreak in a Neonatal Intensive Care Unit.", J Clin Microbiol, 2020 Apr 23;58(5) Thore A et al., "Detection of bacteriuria by luciferase assay of adenosine triphosphate.", J Clin Microbiol, 1975 Jan;1(1):1-8
Submission	Registration date: 28-Mar-2019 tel-aviv sourasky medical center
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	22
WGS master	17
Genomic DNA	5
Protein Sequences	10385
Publications
PubMed	2
PMC	2
Other datasets
BioSample	19
Assembly	19

Assembly details:

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Assembly level

Number of Assemblies

2
1
16
19

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_013867375.1	SPTY00000000		SAMN11270025	NICU_3_P1	Klebsiella pneumoniae
GCA_011682835.2		2	SAMN11270019	NICU_1_P3	Klebsiella pneumoniae
GCA_013450285.1	SPTP00000000		SAMN11270034	NICU_2_P6	Klebsiella pneumoniae
GCA_013450475.1	SPTX00000000		SAMN11270026	NICU_3_P2	Klebsiella pneumoniae
GCA_013450455.1	SPTW00000000		SAMN11270027	NICU_3_P3	Klebsiella pneumoniae
GCA_013450425.1	SPTU00000000		SAMN11270029	NICU_2_P1	Klebsiella pneumoniae
GCA_013450405.1	SPTV00000000		SAMN11270028	NICU_3_P4	Klebsiella pneumoniae
GCA_013450385.1	SPTT00000000		SAMN11270030	NICU_2_P2	Klebsiella pneumoniae
GCA_013450375.1	SPTS00000000		SAMN11270031	NICU_2_P3	Klebsiella pneumoniae
GCA_013450355.1	SPTQ00000000		SAMN11270033	NICU_2_P5	Klebsiella pneumoniae
GCA_013450305.1	SPTR00000000		SAMN11270032	NICU_2_P4	Klebsiella pneumoniae
GCA_011682755.1	SPTZ00000000		SAMN11270024	NICU_1_P8	Klebsiella pneumoniae
GCA_011682735.1	SPUA00000000		SAMN11270023	NICU_1_P7	Klebsiella pneumoniae
GCA_011682815.1	SPUB00000000		SAMN11270022	NICU_1_P6	Klebsiella pneumoniae
GCA_011682905.1	SPUG00000000		SAMN11270017	NICU_1_P1	Klebsiella pneumoniae
GCA_011682885.1	SPUF00000000		SAMN11270018	NICU_1_P2	Klebsiella pneumoniae
GCA_011682855.1	SPUC00000000		SAMN11270021	NICU_1_P5	Klebsiella pneumoniae
GCA_011682845.1	SPUD00000000		SAMN11270020	NICU_1_P4	Klebsiella pneumoniae
GCA_014826045.1		3	SAMN11270035	NICU_2_P7	Klebsiella pneumoniae

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ESBL-Kp genomes from neonates

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