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Accession: PRJNA315256 ID: 315256

biofilter metagenome

Biofilter of household tap filter

Investigate the microbial community structure in the end of drinking water distribution system, that is, the household tap.

Accession	PRJNA315256
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	biofilter metagenome[Taxonomy ID: 1070537] unclassified sequences; metagenomes; ecological metagenomes; biofilter metagenome
Publications	Wang Y et al., "Comammox in drinking water systems.", Water Res, 2017 Jun 1;116:332-341 Pinto AJ et al., "Metagenomic Evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System.", mSphere, 2016 Jan-Feb;1(1)
Submission	Registration date: 10-Apr-2017 The University Hong Kong
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1485
WGS master	18
SRA Experiments	8
Protein Sequences	55796
Publications
PubMed	2
PMC	1
Other datasets
BioSample	21
Assembly	18

Assembly details:

Assembly level

Number of Assemblies

Scaffold

18
18

Assembly	Level	WGS	BioSample	Isolate	Taxonomy
GCA_002083355.1		LVWU00000000	SAMN04592456	HN-bin3	Nitrospira sp. HN-bin3
GCA_002083365.1		LVWS00000000	SAMN04592276	SG-bin1	Nitrospira sp. SG-bin1
GCA_002083405.1		LVWT00000000	SAMN04592277	SG-bin2	Nitrospira sp. SG-bin2
GCA_002083565.1		MSXM00000000	SAMN06189317	ST-bin4	Nitrospira sp. ST-bin4
GCA_002083555.1		MSXN00000000	SAMN06189318	ST-bin5	Nitrospira sp. ST-bin5
GCA_002083515.1		LWDN00000000	SAMN04606798	HN_bin10	Proteobacteria bacterium HN_bin10
GCA_002083395.1		LWDH00000000	SAMN04606791	SG_bin4	Proteobacteria bacterium SG_bin4
GCA_002083475.1		LWDI00000000	SAMN04606793	SG_bin5	Proteobacteria bacterium SG_bin5
GCA_002083435.1		LWDJ00000000	SAMN04606794	SG_bin6	Proteobacteria bacterium SG_bin6
GCA_002083485.1		LWDK00000000	SAMN04606795	SG_bin7	Proteobacteria bacterium SG_bin7
GCA_002083445.1		LWDL00000000	SAMN04606796	SG_bin8	Proteobacteria bacterium SG_bin8
GCA_002083525.1		LWDM00000000	SAMN04606797	SG_bin9	Proteobacteria bacterium SG_bin9
GCA_002083615.1		MSXO00000000	SAMN06189373	ST_bin11	Proteobacteria bacterium ST_bin11
GCA_002083635.1		MSXP00000000	SAMN06189372	ST_bin12	Proteobacteria bacterium ST_bin12
GCA_002083645.1		MSXQ00000000	SAMN06189371	ST_bin13	Proteobacteria bacterium ST_bin13
GCA_002083655.1		MSXR00000000	SAMN06189370	ST_bin14	Proteobacteria bacterium ST_bin14
GCA_002083695.1		MSXS00000000	SAMN06189369	ST_bin15	Proteobacteria bacterium ST_bin15
GCA_002083595.1		MSXT00000000	SAMN06189368	ST_bin16	Proteobacteria bacterium ST_bin16

SRA Data Details

Parameter	Value
Data volume, Gbases	127
Data volume, Mbytes	56535

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