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Links from Protein

Accession: PRJNA287625 ID: 287625

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
Genome sequencing of clinical Escherichia coli isolates
AccessionPRJNA287625
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Grants
  • "Identification of immunodominant antigens in shigatoxin producing Escherichia coli that participate in adhesion to human intestinal cells: serological characterization and possible use as immunogens for protective vaccine development" (Grant ID 1110260, Fondo Nacional de Desarrollo Cientifico y Tecnologico)
  • "Genomic and functional analysis to identify novel adhesins in enterotoxigenic Escherichia coli strains obtained from developing countries" (Grant ID 3130555, Fondo Nacional de Desarrollo Cientifico y Tecnologico)
  • "Metagenomics Based Discovery of New Viral and Eukaryotic Pathogens Causing Diarrheal Disease" (Grant ID 1016839, Bill and Melinda Gates Foundation)
  • "Diarrheal disease in infants and young children in developing countries" (Grant ID 38874, Bill and Melinda Gates Foundation)
SubmissionRegistration date: 21-Dec-2016
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)17876
WGS master92
Protein Sequences483498
Other datasets
BioSample92
Assembly92
Assembly details:
Assembly levelNumber of Assemblies
92
92
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001912145.1ContigLGMT00000000SAMN03785004
302025
GCA_001912115.1ContigLGNC00000000SAMN03785013
703200
GCA_001912105.1ContigLGMR00000000SAMN03785002
401900
GCA_001912085.1ContigLGMQ00000000SAMN03785001
401909
GCA_001912035.1ContigLGMM00000000SAMN03784997
300659
GCA_001912055.1ContigLGMO00000000SAMN03784999
200617
GCA_001912005.1ContigLGMG00000000SAMN03784991
9312a
GCA_001912015.1ContigLGMJ00000000SAMN03784994
9788a
GCA_001911985.1ContigLGMF00000000SAMN03784990
8350a
GCA_001911955.1ContigLGMC00000000SAMN03784987
1241a
GCA_001911935.1ContigLGMD00000000SAMN03784988
4155a
GCA_001911925.1ContigLGMB00000000SAMN03784986
1030c-1
GCA_001911905.1ContigLGLY00000000SAMN03784983
12684a
GCA_001911855.1ContigLGMY00000000SAMN03785009
703098
GCA_001911865.1ContigLGND00000000SAMN03785014
603936
GCA_001911845.1ContigLGNB00000000SAMN03785012
403418
GCA_001911825.1ContigLGMU00000000SAMN03785005
602687
GCA_001911805.1ContigLGMS00000000SAMN03785003
100664
GCA_001911775.1ContigLGMK00000000SAMN03784995
10380a
GCA_001911745.1ContigLGMH00000000SAMN03784992
9343a
GCA_001911755.1ContigLGNF00000000SAMN03785016
403885
GCA_001911725.1ContigLGNE00000000SAMN03785015
505077
GCA_001911695.1ContigLGNA00000000SAMN03785011
203518
GCA_001911665.1ContigLGMX00000000SAMN03785008
702332
GCA_001911675.1ContigLGMZ00000000SAMN03785010
603388
GCA_001911635.1ContigLGMW00000000SAMN03785006
402594
GCA_001911615.1ContigLGMV00000000SAMN03785007
702251
GCA_001911595.1ContigLGMN00000000SAMN03784998
200144
GCA_001911585.1ContigLGMP00000000SAMN03785000
503210
GCA_001911555.1ContigLGML00000000SAMN03784996
700377
GCA_001911545.1ContigLGMI00000000SAMN03784993
9571a
GCA_001911505.1ContigLGME00000000SAMN03784989
8255a
GCA_001911495.1ContigLGMA00000000SAMN03784985
963a-1
GCA_001911485.1ContigLGLZ00000000SAMN03784984
15617a
GCA_001911465.1ContigLGLX00000000SAMN03784982
3693
GCA_001912705.1ContigLRLB00000000SAMN04420292
503688
GCA_001912675.1ContigLRKX00000000SAMN04420288
602646
GCA_001912665.1ContigLRKS00000000SAMN04420273
102148
GCA_001912625.1ContigLRKN00000000SAMN04420264
500883
GCA_001912615.1ContigLRKM00000000SAMN04420263
500487
GCA_001912605.1ContigLRKE00000000SAMN04420207
700239
GCA_001912565.1ContigLRKC00000000SAMN04420125
700324
GCA_001912555.1ContigLRKA00000000SAMN04420122
202545
GCA_001912545.1ContigLRKD00000000SAMN04420206
700328
GCA_001912525.1ContigLRMD00000000SAMN04421843
601028
GCA_001912475.1ContigLRMA00000000SAMN04421283
100197
GCA_001912455.1ContigLRLJ00000000SAMN04420757
702947
GCA_001912485.1ContigLRMB00000000SAMN04421284
100451
GCA_001912445.1ContigLRLI00000000SAMN04420752
702331
GCA_001912425.1ContigLRLF00000000SAMN04420709
402286
GCA_001912375.1ContigLRLC00000000SAMN04420293
503647
GCA_001912385.1ContigLRLE00000000SAMN04420708
102928
GCA_001912365.1ContigLRKZ00000000SAMN04420290
603030
GCA_001912345.1ContigLRLA00000000SAMN04420291
503698
GCA_001912305.1ContigLRKQ00000000SAMN04420271
102265
GCA_001912315.1ContigLRKT00000000SAMN04420278
302031
GCA_001912275.1ContigLRKL00000000SAMN04420262
200907
GCA_001912265.1ContigLRKO00000000SAMN04420265
401624
GCA_001912225.1ContigLRKG00000000SAMN04420239
300735
GCA_001912235.1ContigLRKI00000000SAMN04420241
600555
GCA_001912195.1ContigLRAK00000000SAMN04415413
602748
GCA_001912185.1ContigLRKB00000000SAMN04420123
202733
GCA_001911405.1ContigLRMC00000000SAMN04421285
103199
GCA_001911385.1ContigLRLZ00000000SAMN04421282
100082
GCA_001911335.1ContigLRLV00000000SAMN04421185
703420
GCA_001911325.1ContigLRLW00000000SAMN04421278
703427
GCA_001911315.1ContigLRLU00000000SAMN04421180
403456
GCA_001911305.1ContigLRLT00000000SAMN04421178
403314
GCA_001911245.1ContigLRLO00000000SAMN04420781
203153
GCA_001911255.1ContigLRLS00000000SAMN04421074
403398
GCA_001911235.1ContigLRLN00000000SAMN04420780
203145
GCA_001911225.1ContigLRLL00000000SAMN04420770
504662
GCA_001911175.1ContigLRLH00000000SAMN04420751
402878
GCA_001911165.1ContigLRLG00000000SAMN04420710
402577
GCA_001911155.1ContigLRLD00000000SAMN04420294
102878
GCA_001911145.1ContigLRKY00000000SAMN04420289
602720
GCA_001911085.1ContigLRKU00000000SAMN04420279
300783
GCA_001911095.1ContigLRKW00000000SAMN04420281
302555
GCA_001911065.1ContigLRKR00000000SAMN04420272
100885
GCA_001911075.1ContigLRKV00000000SAMN04420280
302057
GCA_001911005.1ContigLRKP00000000SAMN04420266
100714
GCA_001911015.1ContigLRKK00000000SAMN04420252
200244
GCA_001910995.1ContigLRKJ00000000SAMN04420250
600035
GCA_001910985.1ContigLRKH00000000SAMN04420240
300769
GCA_001910935.1ContigLRLX00000000SAMN04421280
703491
GCA_001910925.1ContigLRLY00000000SAMN04421281
703348
GCA_001910915.1ContigLRKF00000000SAMN04420238
300237
GCA_001910905.1ContigLRLR00000000SAMN04421016
204021
GCA_001910845.1ContigLRLP00000000SAMN04420783
203272
GCA_001910855.1ContigLRLM00000000SAMN04420771
201530
GCA_001910825.1ContigLRLK00000000SAMN04420759
302042
GCA_001910835.1ContigLRLQ00000000SAMN04420897
203739

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