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Accession: PRJNA215355 ID: 215355

Listeria monocytogenes

GenomeTrakr Project: US Food and Drug Administration

See Genome Information for Listeria monocytogenes
Listeria monocytogenes Database: isolates from the Food and Drug Administration, Center for Food Safety and Applied Nutrition
AccessionPRJNA215355
Data TypeGenome sequencing and assembly
ScopeMultispecies
KeywordGMI
OrganismListeria monocytogenes[Taxonomy ID: 1639]
Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria; Listeria monocytogenes
Publications (total 3)
  • Pirone-Davies C et al., "Genes significantly associated with lineage II food isolates of Listeria monocytogenes.", BMC Genomics, 2018 Sep 25;19(1):708
More...
SubmissionRegistration date: 17-Nov-2014
FDA/CFSAN
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)23886
WGS master10386
Genomic DNA21
SRA Experiments11454
Protein Sequences1024984
Publications
PubMed3
PMC3
Other datasets
BioSample12904
Assembly10402
Supplementary data
Base modification6
Assembly details:
Assembly levelNumber of Assemblies
16
21
10365
10402
AssemblyLevelWGSChrsBioSampleInfraspecies IdTaxonomy
GCA_004130025.1ContigAAAACI000000000
SAMN10485194
FDA00013695
GCA_004392765.1ContigAAAIHE000000000
SAMN10485195
FDA00013700
GCA_004474445.1ContigAAANZJ000000000
SAMN10461405
C2018018030
GCA_004527345.1ContigAAARFT000000000
SAMN11082428
FDA00013925
GCA_004527605.1ContigAAARFV000000000
SAMN11082615
FDA00013924
GCA_004526705.1ContigAAARFX000000000
SAMN11082620
FDA00013923
GCA_004629355.1ContigAAAXKH000000000
SAMN08283965
NY83364174
GCA_000787905.1ContigJRZA00000000
SAMN02769798
MOD1_LS889
GCA_000787895.1ContigJRYY00000000
SAMN02769795
MOD1_LS884
GCA_000787925.1ContigJRZB00000000
SAMN02769791
MOD1_LS743
GCA_000787915.1ContigJRYZ00000000
SAMN02769796
MOD1_LS885
GCA_001047715.1Complete genomeSAMN03002783
CFSAN023463
GCA_001005985.1Complete genomeSAMN02569973
CFSAN007956
GCA_000681515.1Complete genomeSAMN02318985
CFSAN006122
GCA_001257515.1ContigLHSB00000000
SAMN02991383
MOD1_LS996
GCA_001257495.1ContigLHSE00000000
SAMN03002788
CFSAN023468
GCA_001257525.1ContigLHSD00000000
SAMN02990454
MOD1_LS1004
GCA_001257635.1ContigLHSA00000000
SAMN02991390
MOD1_LS1005
GCA_001257585.1ContigLHRY00000000
SAMN02991394
MOD1_LS1011
GCA_001257505.1ContigLHSC00000000
SAMN02990456
MOD1_LS1010
GCA_001257575.1ContigLHSF00000000
SAMN03002785
CFSAN023465
GCA_001257595.1ContigLHRZ00000000
SAMN02991393
MOD1_LS1009
GCA_001720925.1ContigMAGN00000000
SAMN03447009
KS-15037-8
GCA_001676935.1ContigMAJL00000000
SAMN05150248
FSIS1606618
GCA_001594305.1ContigLUBA00000000
SAMN02850684
CFSAN012299
GCA_001582965.1ContigLUEV00000000
SAMN04414879
CFSAN026582
GCA_001582935.1ContigLUEW00000000
SAMN04414876
CFSAN026579
GCA_001582955.1ContigLUEX00000000
SAMN04414875
CFSAN026578
GCA_001582945.1ContigLUEY00000000
SAMN04414874
CFSAN026577
GCA_001583395.1ContigLUEB00000000
SAMN04414905
CFSAN026610
GCA_001583365.1ContigLUEC00000000
SAMN04414904
CFSAN026609
GCA_001583355.1ContigLUED00000000
SAMN04414902
CFSAN026606
GCA_001583335.1ContigLUEE00000000
SAMN04414901
CFSAN026605
GCA_001583315.1ContigLUEF00000000
SAMN04414900
CFSAN026604
GCA_001583275.1ContigLUEH00000000
SAMN04414897
CFSAN026601
GCA_001583285.1ContigLUEG00000000
SAMN04414898
CFSAN026602
GCA_001583255.1ContigLUEI00000000
SAMN04414894
CFSAN026597
GCA_001583235.1ContigLUEJ00000000
SAMN04414893
CFSAN026596
GCA_001583205.1ContigLUEK00000000
SAMN04414892
CFSAN026595
GCA_001583185.1ContigLUEL00000000
SAMN04414889
CFSAN026592
GCA_001583175.1ContigLUEM00000000
SAMN04414888
CFSAN026591
GCA_001583155.1ContigLUEN00000000
SAMN04414887
CFSAN026590
GCA_001583125.1ContigLUEO00000000
SAMN04414886
CFSAN026589
GCA_001583105.1ContigLUEP00000000
SAMN04414885
CFSAN026588
GCA_001583095.1ContigLUEQ00000000
SAMN04414884
CFSAN026587
GCA_001583065.1ContigLUER00000000
SAMN04414883
CFSAN026586
GCA_001583055.1ContigLUES00000000
SAMN04414882
CFSAN026585
GCA_001583025.1ContigLUET00000000
SAMN04414881
CFSAN026584
GCA_001583015.1ContigLUEU00000000
SAMN04414880
CFSAN026583
GCA_001578025.1ContigLSPO00000000
SAMN04414907
CFSAN026612
GCA_001578015.1ContigLSPP00000000
SAMN04414906
CFSAN026611
GCA_001577955.1ContigLSPQ00000000
SAMN04414903
CFSAN026607
GCA_001577965.1ContigLSPR00000000
SAMN04414899
CFSAN026603
GCA_001577935.1ContigLSPS00000000
SAMN04414896
CFSAN026599
GCA_001577945.1ContigLSPT00000000
SAMN04414895
CFSAN026598
GCA_001577885.1ContigLSPV00000000
SAMN04414890
CFSAN026593
GCA_001577875.1ContigLSPX00000000
SAMN04414877
CFSAN026580
GCA_001577855.1ContigLSPU00000000
SAMN04414891
CFSAN026594
GCA_001577865.1ContigLSPW00000000
SAMN04414878
CFSAN026581
GCA_001578045.1ContigLSPN00000000
SAMN04414908
CFSAN026613
GCA_001548635.1Complete genomeSAMN02666871
CFSAN010068
GCA_001548585.1Complete genomeSAMN03002779
CFSAN023459
GCA_003265125.1ContigQELZ00000000
SAMN08995134
N13-0703
GCA_003265055.1ContigQELY00000000
SAMN08995135
N13-0836
GCA_003265045.1ContigQELW00000000
SAMN08995137
N14-0261
GCA_003265075.1ContigQELX00000000
SAMN08995136
N13-1184
GCA_003265065.1ContigQEMA00000000
SAMN08995133
N12-0460
GCA_003268755.1ContigQEMB00000000
SAMN08995132
N11-1848
GCA_003054735.1ContigQBEY00000000
SAMN08287520
DFPST0073
GCA_003097455.1ContigQELV00000000
SAMN08995138
N16-0716
GCA_003097435.1ContigQELU00000000
SAMN08995139
N16-0855
GCA_003097415.1ContigQELT00000000
SAMN08995140
N16-1125
GCA_001005925.2Complete genomeSAMN02689388
CFSAN008100
GCA_003003965.1ContigPVVI00000000
SAMN03800286
CFSAN035183
GCA_003004035.1ContigPVVO00000000
SAMN03800292
CFSAN035189
GCA_003002835.1ScaffoldPVVQ00000000
SAMN03800294
CFSAN035191
GCA_003002785.1ContigPVVV00000000
SAMN03800302
CFSAN035199
GCA_003002775.1ScaffoldPVVS00000000
SAMN03800297
CFSAN035194
GCA_003002755.1ContigPVVY00000000
SAMN03800305
CFSAN035202
GCA_003002695.1ScaffoldPVVU00000000
SAMN03800301
CFSAN035198
GCA_003002705.1ContigPVVX00000000
SAMN03800304
CFSAN035201
GCA_003002735.1ContigPVVW00000000
SAMN03800303
CFSAN035200
GCA_003002675.1ContigPVVT00000000
SAMN03800300
CFSAN035197
GCA_003002655.1ScaffoldPVVR00000000
SAMN03800296
CFSAN035193
GCA_003002635.1ScaffoldPVVN00000000
SAMN03800291
CFSAN035188
GCA_003002615.1ScaffoldPVVE00000000
SAMN03800281
CFSAN035178
GCA_003002595.1ScaffoldPVVM00000000
SAMN03800290
CFSAN035187
GCA_003002575.1ContigPVUZ00000000
SAMN03800275
CFSAN035172
GCA_003002555.1ContigPVVC00000000
SAMN03800279
CFSAN035176
GCA_003002535.1ContigPVUY00000000
SAMN03800274
CFSAN035171
GCA_003002515.1ContigPVVB00000000
SAMN03800277
CFSAN035174
GCA_003002495.1ScaffoldPVVK00000000
SAMN03800288
CFSAN035185
GCA_003002475.1ScaffoldPVUW00000000
SAMN03800272
CFSAN035169
GCA_003002445.1ContigPVVJ00000000
SAMN03800287
CFSAN035184
GCA_003002435.1ScaffoldPVUP00000000
SAMN03800265
CFSAN035162
GCA_003002415.1ContigPVVL00000000
SAMN03800289
CFSAN035186
GCA_003002395.1ContigPVVH00000000
SAMN03800285
CFSAN035182
GCA_003002355.1ScaffoldPVVG00000000
SAMN03800283
CFSAN035180
GCA_003002345.1ScaffoldPVVF00000000
SAMN03800282
CFSAN035179
GCA_003002335.1ScaffoldPVVD00000000
SAMN03800280
CFSAN035177
GCA_003002315.1ScaffoldPVVA00000000
SAMN03800276
CFSAN035173
GCA_003002295.1ScaffoldPVUV00000000
SAMN03800271
CFSAN035168
GCA_003002255.1ScaffoldPVUU00000000
SAMN03800270
CFSAN035167
GCA_003002265.1ScaffoldPVUX00000000
SAMN03800273
CFSAN035170
GCA_003002235.1ContigPVUT00000000
SAMN03800269
CFSAN035166
GCA_003002215.1ScaffoldPVUR00000000
SAMN03800267
CFSAN035164
GCA_003002195.1ContigPVUS00000000
SAMN03800268
CFSAN035165
GCA_003002175.1ContigPVUQ00000000
SAMN03800266
CFSAN035163
GCA_003002155.1ScaffoldPVUO00000000
SAMN03800264
CFSAN035161
GCA_003004095.1ScaffoldPVVZ00000000
SAMN03800306
CFSAN035203
GCA_003004055.1ScaffoldPVVP00000000
SAMN03800293
CFSAN035190
GCA_002916215.1ContigPQHQ00000000
SAMN08162132
CDPHFDLB-F15M02769
GCA_002916195.1ContigPQHS00000000
SAMN08161555
CDPHFDLB-F15M02766
GCA_002916165.1ContigPQHM00000000
SAMN08162219
CDPHFDLB-FM17-00087
GCA_002916145.1ContigPQHJ00000000
SAMN08162233
CDPHFDLB-FM17-00091
GCA_002916135.1ContigPQHI00000000
SAMN08162243
CDPHFDLB-FM17-00092
GCA_002916115.1ContigPQHG00000000
SAMN08162238
CDPHFDLB-FM17-00110
GCA_002916095.1ContigPQHE00000000
SAMN08162042
CDPHFDLB-FM17-00115
GCA_002916065.1ContigPQGZ00000000
SAMN08162239
CDPHFDLB-FM17-00125
GCA_002916055.1ContigPQHU00000000
SAMN08161554
CDPHFDLB-F15M00075-1
GCA_002916035.1ContigPQHT00000000
SAMN08161552
CDPHFDLB-F15M02749
GCA_002916015.1ContigPQHR00000000
SAMN08162098
CDPHFDLB-F15M02768
GCA_002915995.1ContigPQHP00000000
SAMN08161551
CDPHFDLB-F1603037-20a
GCA_002915975.1ContigPQHN00000000
SAMN07204972
CDPHFDLB-F1704007-008
GCA_002915955.1ContigPQHO00000000
SAMN07204973
CDPHFDLB-F1704007-002
GCA_002915935.1ContigPQHL00000000
SAMN08162222
CDPHFDLB-FM17-00088
GCA_002915915.1ContigPQHK00000000
SAMN08162223
CDPHFDLB-FM17-00090
GCA_002915895.1ContigPQHH00000000
SAMN08162225
CDPHFDLB-FM17-00100
GCA_002915865.1ContigPQHF00000000
SAMN08162240
CDPHFDLB-FM17-00114
GCA_002915855.1ContigPQHD00000000
SAMN08162128
CDPHFDLB-FM17-00118
GCA_002915835.1ContigPQHC00000000
SAMN08162234
CDPHFDLB-FM17-00120
GCA_002915815.1ContigPQHB00000000
SAMN08162237
CDPHFDLB-FM17-00121
GCA_002915795.1ContigPQHA00000000
SAMN08162236
CDPHFDLB-FM17-00123
GCA_002915765.1ContigPQGY00000000
SAMN08162242
CDPHFDLB-FM17-00126
GCA_002915755.1ContigPQGW00000000
SAMN08162220
CDPHFDLB-FM17-00137
GCA_002915735.1ContigPQGX00000000
SAMN08162235
CDPHFDLB-FM17-00136
GCA_002915695.1ContigPQGT00000000
SAMN08162217
CDPHFDLB-FM17-00159
GCA_002915665.1ContigPQGU00000000
SAMN08162241
CDPHFDLB-FM17-00158
GCA_002915705.1ContigPQGV00000000
SAMN08162221
CDPHFDLB-FM17-00149
GCA_002915655.1ContigPQGS00000000
SAMN08161553
CDPHFDLB-FM17-00161
GCA_002749155.1ContigNYNE00000000
SAMN05163898
CDPHFDLB-F1605001-003-2A3
GCA_001908335.1Complete genomeSAMN03386937
CFSAN029793
GCA_001911415.1ContigMRYJ00000000
SAMN04450328
FDA00009837
GCA_001922515.1ContigLYXY00000000
SAMN03287233
FDA00008730
GCA_002105655.1Complete genomeSAMN02769705
MOD1_LS152
GCA_002105635.1Complete genomeSAMN02990220
CFSAN022990
GCA_002105615.1Complete genomeSAMN03285109
CFSAN028538
GCA_002086985.1ContigNBIN00000000
SAMN04506982
FDA00009921
GCA_002016665.1ContigMAKW00000000
SAMN03285319
WAPHL_LIS_A00021
GCA_002222775.1ContigNKVY00000000
SAMN03339952
WAPHL_LIS_A00031
GCA_002222785.1ContigNKVX00000000
SAMN03339953
WAPHL_LIS_A00032
GCA_002222765.1ContigNKVW00000000
SAMN03339954
WAPHL_LIS_A00033
GCA_002222715.1ContigNKVV00000000
SAMN03339955
WAPHL_LIS_A00034
GCA_002285835.1Complete genomeSAMN06339459
FDA00011238
GCA_002285655.1Complete genomeSAMN02923159
FDA00006905
GCA_002208215.1Complete genomeSAMN02923161
FDA00006907
GCA_002149945.1ContigMSDN00000000
SAMN03462190
CDPHFDLB-F14M01770.86-1
GCA_002490225.1ContigNYQY00000000
SAMN07204969
CDPHFDLB-F07F-672
GCA_002490205.1ContigNYQX00000000
SAMN07204968
CDPHFDLB-F09M01162
GCA_002490165.1ContigNYQV00000000
SAMN07204966
CDPHFDLB-F09M01172
GCA_002490175.1ContigNYQW00000000
SAMN07204967
CDPHFDLB-F09M01164
GCA_002490145.1ContigNYSI00000000
SAMN07204964
CDPHFDLB-F10M00415b
GCA_002490125.1ContigNYQS00000000
SAMN07204975
CDPHFDLB-F10M00444b
GCA_002490105.1ContigNYQU00000000
SAMN07204965
CDPHFDLB-F10M00415a
GCA_002490085.1ContigNYQT00000000
SAMN07204976
CDPHFDLB-F10M00444a
GCA_002490045.1ContigNYQQ00000000
SAMN03462206
CDPHFDLB-F12M00817
GCA_002490055.1ContigNYQR00000000
SAMN03462213
CDPHFDLB-F11M00452
GCA_002490015.1ContigNYQP00000000
SAMN03462207
CDPHFDLB-F12M00821
GCA_002490005.1ContigNYSH00000000
SAMN03462205
CDPHFDLB-F12M00816
GCA_002489985.1ContigNYQO00000000
SAMN03462208
CDPHFDLB-F12M00823
GCA_002489945.1ContigNYQL00000000
SAMN03462211
CDPHFDLB-F12M00828
GCA_002489955.1ContigNYQN00000000
SAMN03462209
CDPHFDLB-F12M00826
GCA_002489915.1ContigNYQM00000000
SAMN03462210
CDPHFDLB-F12M00827
GCA_002489905.1ContigNYQJ00000000
SAMN03462214
CDPHFDLB-F12M00831
GCA_002489885.1ContigNYQK00000000
SAMN03462212
CDPHFDLB-F12M00829
GCA_002489855.1ContigNYQI00000000
SAMN03462194
CDPHFDLB-F12M00833
GCA_002489845.1ContigNYSG00000000
SAMN03462195
CDPHFDLB-F12M00834
GCA_002489825.1ContigNYQH00000000
SAMN03462196
CDPHFDLB-F12M00835
GCA_002489805.1ContigNYQG00000000
SAMN03462197
CDPHFDLB-F12M00836
GCA_002489775.1ContigNYSF00000000
SAMN03462201
CDPHFDLB-F12M00869a
GCA_002489765.1ContigNYQD00000000
SAMN03462200
CDPHFDLB-F12M00839
GCA_002489735.1ContigNYQF00000000
SAMN03462198
CDPHFDLB-F12M00837
GCA_002489725.1ContigNYQE00000000
SAMN03462199
CDPHFDLB-F12M00838
GCA_002489675.1ContigNYSE00000000
SAMN03464913
CDPHFDLB-F12M00869b
GCA_002489655.1ContigNYQC00000000
SAMN03462202
CDPHFDLB-F12M00922
GCA_002489665.1ContigNYQB00000000
SAMN03462203
CDPHFDLB-F12M00923
GCA_002489645.1ContigNYQA00000000
SAMN03462204
CDPHFDLB-F12M00925
GCA_002489625.1ContigNYSD00000000
SAMN03462153
CDPHFDLB-F13M00450a
GCA_002489585.1ContigNYSC00000000
SAMN03462154
CDPHFDLB-F13M00450b
GCA_002489575.1ContigNYSB00000000
SAMN03462155
CDPHFDLB-F13M00450c
GCA_002489565.1ContigNYRZ00000000
SAMN03462157
CDPHFDLB-F13M00804a
GCA_002489545.1ContigNYPZ00000000
SAMN03462158
CDPHFDLB-F13M00804b
GCA_002489515.1ContigNYSA00000000
SAMN03462156
CDPHFDLB-F13M00450d
GCA_002489505.1ContigNYRY00000000
SAMN03462159
CDPHFDLB-F13M00804c
GCA_002489475.1ContigNYPY00000000
SAMN03462160
CDPHFDLB-F14M00526a
GCA_002489465.1ContigNYPX00000000
SAMN03464912
CDPHFDLB-F14M00526b
GCA_002489435.1ContigNYPW00000000
SAMN03462161
CDPHFDLB-F14M01297.C1
GCA_002489425.1ContigNYPT00000000
SAMN03462166
CDPHFDLB-F14M01574.16-2
GCA_002489405.1ContigNYPU00000000
SAMN03462165
CDPHFDLB-F14M01574.16-1
GCA_002489385.1ContigNYPV00000000
SAMN03462163
CDPHFDLB-F14M01297.C3
GCA_002489325.1ContigNYPS00000000
SAMN03462167
CDPHFDLB-F14M01574.16-3
GCA_002489315.1ContigNYPP00000000
SAMN03462170
CDPHFDLB-F14M01604.46-2
GCA_002489305.1ContigNYPQ00000000
SAMN03462169
CDPHFDLB-F14M01604.46-1
GCA_002489335.1ContigNYPR00000000
SAMN03462168
CDPHFDLB-F14M01574.16-4
GCA_002489275.1ContigNYRX00000000
SAMN03462173
CDPHFDLB-F14M01612.54-3
GCA_002489265.1ContigNYPO00000000
SAMN03462171
CDPHFDLB-F14M01612.54-1
GCA_002489235.1ContigNYPM00000000
SAMN03462174
CDPHFDLB-F14M01612.54-4
GCA_002489225.1ContigNYPN00000000
SAMN03462172
CDPHFDLB-F14M01612.54-2
GCA_002489185.1ContigNYRW00000000
SAMN03462176
CDPHFDLB-F14M01618.60-2
GCA_002489195.1ContigNYPL00000000
SAMN03462175
CDPHFDLB-F14M01618.60-1
GCA_002489165.1ContigNYRU00000000
SAMN03462178
CDPHFDLB-F14M01624.66-2
GCA_002489145.1ContigNYRV00000000
SAMN03462177
CDPHFDLB-F14M01624.66-1
GCA_002489105.1ContigNYPJ00000000
SAMN03462181
CDPHFDLB-F14M01626.68-3
GCA_002489115.1ContigNYRT00000000
SAMN03462180
CDPHFDLB-F14M01626.68-2
GCA_002489065.1ContigNYPI00000000
SAMN03462182
CDPHFDLB-F14M01632.74-1
GCA_002489075.1ContigNYPK00000000
SAMN03462179
CDPHFDLB-F14M01626.68-1
GCA_002489035.1ContigNYRS00000000
SAMN03462183
CDPHFDLB-F14M01632.74-2
GCA_002489025.1ContigNYPH00000000
SAMN03462184
CDPHFDLB-F14M01633.75-1
GCA_002488975.1ContigNYPF00000000
SAMN03462186
CDPHFDLB-F14M01635.77-1
GCA_002488965.1ContigNYPE00000000
SAMN03462187
CDPHFDLB-F14M01635.77-2
GCA_002488945.1ContigNYPD00000000
SAMN03462188
CDPHFDLB-F14M01635.77-3
GCA_002488925.1ContigNYPC00000000
SAMN03462189
CDPHFDLB-F14M01635.77-4
GCA_002488885.1ContigNYRR00000000
SAMN03462191
CDPHFDLB-F14M01770.86-2
GCA_002488855.1ContigNYRP00000000
SAMN03863783
CDPHFDLB-F15M01605-12B
GCA_002488845.1ContigNYPA00000000
SAMN03462192
CDPHFDLB-F14M01770.86-3
GCA_002488805.1ContigNYRO00000000
SAMN03863784
CDPHFDLB-F15M01624-32A
GCA_002488815.1ContigNYRQ00000000
SAMN03462193
CDPHFDLB-F14M01770.86-4
GCA_002488745.1ContigNYRM00000000
SAMN03863781
CDPHFDLB-F15M01690-1'
GCA_002488725.1ContigNYRN00000000
SAMN03863785
CDPHFDLB-F15M01653-61B
GCA_002488755.1ContigNYRL00000000
SAMN03863782
CDPHFDLB-F15M01712-1'
GCA_002488735.1ContigNYOZ00000000
SAMN03943542
CDPHFDLB-F15M02278-2b
GCA_002488705.1ContigNYOY00000000
SAMN03943543
CDPHFDLB-F15M02279-3b
GCA_002488665.1ContigNYOX00000000
SAMN03943544
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