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Genome Information for Pseudomonas syringae
A comparison of an epiphytic strain (B728a) that colonizes plant surfaces before causing disease, and an endophytic strain (DC3000) that poorly colonizes plant surfaces but can grow inside the host. Genomic comparison revealed 9 major chromosome rearrangements between the two strains, but GC-skew analysis indicates that these rearrangements occurred a significant amount of time in evolutionary history. B782a has fewer IS elements than DC3000, but there are 14 genomic island in B782a as compared to DC3000 including a prophage similar to LambdaSO from
Shewanella oneidensis and another similar to the conjugative plasmid pKLC102 of
Pseudomonas aeruginoase PAO1. B728a carries an ice nucleation gene (Psyr_1608) which produces an outer membrane protein that forms an ice nucleation center and a separate gene (Psyr_0931) that produces an antifreeze protein.
More...A comparison of an epiphytic strain (B728a) that colonizes plant surfaces before causing disease, and an endophytic strain (DC3000) that poorly colonizes plant surfaces but can grow inside the host. Genomic comparison revealed 9 major chromosome rearrangements between the two strains, but GC-skew analysis indicates that these rearrangements occurred a significant amount of time in evolutionary history. B782a has fewer IS elements than DC3000, but there are 14 genomic island in B782a as compared to DC3000 including a prophage similar to LambdaSO from
Shewanella oneidensis and another similar to the conjugative plasmid pKLC102 of
Pseudomonas aeruginoase PAO1. B728a carries an ice nucleation gene (Psyr_1608) which produces an outer membrane protein that forms an ice nucleation center and a separate gene (Psyr_0931) that produces an antifreeze protein. There are significant differences in the virulence genes and systems carried by these two organisms which probably have roles in host and tissue specificity.
Less...Accession | PRJNA15584 |
Type | Umbrella Comparative genomics project (Subtype:Comparative genomics) |
Organism | Pseudomonas syringae[Taxonomy ID: 317] Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae |
Submission | Registration date: 11-Aug-2005 DOE Joint Genome Institute |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (Genomic DNA) | 4 |
Protein Sequences | 10710 |
Publications |
PubMed | 2 |
PMC | 2 |
Other datasets |
BioSample | 3 |
Assembly | 2 |
Pseudomonas syringae encompasses the following 2 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Complete genome | 2
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