microbial mat metagenome (ID 72255) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA72255 ID: 72255

microbial mat metagenome

Lake Huron Sinkhole Photosynthetic Microbial Mats Metagenome

Navigate Up

This project is a component of the Microbial mat communities from Middle Island Sinkhole

Navigate Across

1 additional project is a component of the Microbial mat communities from Middle Island Sinkhole.

Purple microbial (Photo- and chemosynthetic) mats found in low-oxygen/high-sulfur sink holes located in Lake Huron, MI. More...

Accession	PRJNA72255
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	microbial mat metagenome[Taxonomy ID: 527640] unclassified sequences; metagenomes; ecological metagenomes; microbial mat metagenome
Grants	"Collaborative Research: EAGER: Genomic insights into microbial mat diversity and Proterozoic geobiology" (Grant ID EAR1035955, National Science Foundation)
Submission	Registration date: 29-Jul-2015 University of Michigan
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	132
WGS master	84
Genomic DNA	48
SRA Experiments	26
Protein Sequences	157
Other datasets
BioSample	111
Assembly	85

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

82
1
83

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_020049495.1	JAIFKU000000000	SAMN20441918	bin_122	Accumulibacter sp.
GCA_020047775.1	JAIFNK000000000	SAMN20441986	bin_89	Akkermansia sp.
GCA_020049345.1	JAIFKY000000000	SAMN20441922	bin_141	Anaerolinea sp.
GCA_020049195.1	JAIFLI000000000	SAMN20441932	bin_179	Anaerolinea sp.
GCA_020048375.1	JAIFMQ000000000	SAMN20441966	bin_43	Anaerolinea sp.
GCA_020047815.1	JAIFNG000000000	SAMN20441982	bin_8	Anaerolinea sp.
GCA_020048055.1	JAIFNA000000000	SAMN20441976	Bin_6_9	Arcobacter sp.
GCA_020048575.1	JAIFMI000000000	SAMN20441958	Bin_3_1	Bacillariophyta sp.
GCA_020048535.1	JAIFMJ000000000	SAMN20441959	Bin_3_3	Bacillariophyta sp.
GCA_020048595.1	JAIFMH000000000	SAMN20441957	bin_3	Bacteroidota bacterium
GCA_020048555.1	JAIFMK000000000	SAMN20441960	bin_33	Bacteroidota bacterium
GCA_020048645.1	JAIFMG000000000	SAMN20441956	bin_28	Bacteroidota bacterium
GCA_020048815.1	JAIFLZ000000000	SAMN20441949	bin_239	Bacteroidota bacterium
GCA_020047935.1	JAIFNC000000000	SAMN20441978	bin_69	Bacteroidota bacterium
GCA_020048155.1	JAIFMY000000000	SAMN20441974	bin_57	Bacteroidota bacterium
GCA_020049015.1	JAIFLP000000000	SAMN20441939	bin_207	Bacteroidota bacterium
GCA_020048915.1	JAIFLU000000000	SAMN20441944	bin_228	Bacteroidota bacterium
GCA_020049295.1	JAIFLC000000000	SAMN20441926	bin_153	Bacteroidota bacterium
GCA_020049445.1	JAIFKR000000000	SAMN20441915	bin_117	Bacteroidota bacterium
GCA_020047835.1	JAIFNJ000000000	SAMN20441985	bin_88	Bacteroidota bacterium
GCA_020047755.1	JAIFNL000000000	SAMN20441987	bin_9	Bacteroidota bacterium
GCA_020047715.1	JAIFNN000000000	SAMN20441989	bin_92	Bacteroidota bacterium
GCA_020047725.1	JAIFNM000000000	SAMN20441988	bin_91	Betaproteobacteria bacterium
GCA_020049415.1	JAIFKV000000000	SAMN20441919	bin_127	Betaproteobacteria bacterium
GCA_020049535.1	JAIFKP000000000	SAMN20441913	bin_111	Betaproteobacteria bacterium
GCA_020049245.1	JAIFLB000000000	SAMN20441925	bin_151	Betaproteobacteria bacterium
GCA_020048735.1	JAIFMC000000000	SAMN20441952	bin_250	Candidatus Vampirococcus sp.
GCA_020049095.1	JAIFLM000000000	SAMN20441936	bin_193	Chlorobiota bacterium
GCA_020049115.1	JAIFLK000000000	SAMN20441934	bin_187	Chloroflexota bacterium
GCA_020049435.1	JAIFKT000000000	SAMN20441917	bin_120	Chloroflexota bacterium
GCA_020047785.1	JAIFNI000000000	SAMN20441984	bin_86	Clostridia bacterium
GCA_020049385.1	JAIFKW000000000	SAMN20441920	bin_131	Collimonas sp.
GCA_020048105.1	JAIFMW000000000	SAMN20441972	bin_5	Deltaproteobacteria bacterium
GCA_020049075.1	JAIFLO000000000	SAMN20441938	bin_204	Desulfobacteraceae bacterium
GCA_020049595.1	JAIFKL000000000	SAMN20441909	bin_101	Desulfobacteraceae bacterium
GCA_020047855.1	JAIFNH000000000	SAMN20441983	bin_83	Desulfobacteraceae bacterium
GCA_020048635.1	JAIFMF000000000	SAMN20441955	bin_26	Desulfobacula sp.
GCA_020049145.1	JAIFLH000000000	SAMN20441931	bin_170	Desulfobulbaceae bacterium
GCA_020049575.1	JAIFKM000000000	SAMN20441910	bin_102	Desulfobulbaceae bacterium
GCA_020047955.1	JAIFNB000000000	SAMN20441977	bin_61	Desulfocapsa sp.
GCA_020049165.1	JAIFLG000000000	SAMN20441930	bin_169	Draconibacterium sp.
GCA_020048955.1	JAIFLT000000000	SAMN20441943	bin_227	Flavobacterium sp.
GCA_020047885.1	JAIFNF000000000	SAMN20441981	bin_78	Gammaproteobacteria bacterium
GCA_020049235.1	JAIFLE000000000	SAMN20441928	bin_164	Gammaproteobacteria bacterium
GCA_020048985.1	JAIFLR000000000	SAMN20441941	bin_209	Halobacteriovorax sp.
GCA_020047875.1	JAIFNE000000000	SAMN20441980	bin_70	Hydrogenophaga sp.
GCA_020048405.1	JAIFMP000000000	SAMN20441965	Bin_4_4	Hydrogenophaga sp.
GCA_020048335.1	JAIFMS000000000	SAMN20441968	bin_45	Methylococcaceae bacterium
GCA_020049335.1	JAIFKX000000000	SAMN20441921	bin_132	Paludibacter sp.
GCA_020049515.1	JAIFKQ000000000	SAMN20441914	bin_112	Paludibacter sp.
GCA_020049635.1	JAIFKK000000000	SAMN20441908	Bin_1	Phormidium sp. Bin_1
GCA_020048835.1	JAIFLY000000000	SAMN20441948	bin_235_243	Planktothrix sp. bin_235_243
GCA_020049375.1	JAIFKZ000000000	SAMN20441923	bin_143	Pseudanabaena sp. bin_143
GCA_020049555.1	JAIFKO000000000	SAMN20441912	bin_106	Rhodoferax sp.
GCA_020049215.1	JAIFLF000000000	SAMN20441929	bin_167	Rhodoferax sp.
GCA_020048895.1	JAIFLV000000000	SAMN20441945	bin_229	Rhodoferax sp.
GCA_020048795.1	JAIFMA000000000	SAMN20441950	bin_246	Rhodoferax sp.
GCA_020048485.1	JAIFMN000000000	SAMN20441963	Bin_4_1	Rhodoferax sp.
GCA_020048475.1	JAIFMM000000000	SAMN20441962	bin_38	Rhodoferax sp.
GCA_020048295.1	JAIFMT000000000	SAMN20441969	bin_46	Rhodoferax sp.
GCA_020048255.1	JAIFMR000000000	SAMN20441967	bin_44	Rhodoferax sp.
GCA_020048975.1	JAIFLQ000000000	SAMN20441940	bin_208	Rickettsia sp.
GCA_020049315.1	JAIFLA000000000	SAMN20441924	bin_144	Sideroxydans sp.
GCA_020049045.1	JAIFLN000000000	SAMN20441937	bin_199	Spirochaetota bacterium
GCA_020048755.1	JAIFMD000000000	SAMN20441953	bin_251	Spirochaetota bacterium
GCA_020048715.1	JAIFME000000000	SAMN20441954	bin_256	Spirulina sp. bin_256
GCA_020048175.1	JAIFMV000000000	SAMN20441971	bin_49	Sulfuricurvum sp.
GCA_020048095.1	JAIFMZ000000000	SAMN20441975	Bin_6_3	Sulfurimonas sp.
GCA_020048435.1	JAIFMO000000000	SAMN20441964	Bin_4_3_4	Sulfuritalea sp.
GCA_020048875.1	JAIFLW000000000	SAMN20441946	bin_233	Sulfurospirillum sp.
GCA_020048845.1	JAIFLX000000000	SAMN20441947	bin_234	Thioploca sp.
GCA_020049035.1	JAIFLL000000000	SAMN20441935	bin_188	Thioploca sp.
GCA_020048515.1	JAIFML000000000	SAMN20441961	bin_35	Thioploca sp.
GCA_020048775.1	JAIFMB000000000	SAMN20441951	bin_247	Thioploca sp.
GCA_020049225.1	JAIFLD000000000	SAMN20441927	bin_158	Thiotrichaceae bacterium
GCA_020049615.1	JAIFKN000000000	SAMN20441911	bin_105	bacterium
GCA_020049465.1	JAIFKS000000000	SAMN20441916	bin_118	bacterium
GCA_020049135.1	JAIFLJ000000000	SAMN20441933	bin_182	bacterium
GCA_020048935.1	JAIFLS000000000	SAMN20441942	bin_212	bacterium
GCA_020047915.1	JAIFND000000000	SAMN20441979	Bin_7_3	bacterium
GCA_020048125.1	JAIFMX000000000	SAMN20441973	bin_50	bacterium
GCA_020048285.1	JAIFMU000000000	SAMN20441970	bin_47	bacterium
GCA_001188585.2	JFJP00000000	SAMN02602958	-	microbial mat metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	235
Data volume, Tbytes	0.14

Related Project Category: Same Sample

PRJNA73827 : Lake Huron Sinkhole Targeted Locus

BioProject

Result Filters

Display Settings:

Send to:

microbial mat metagenome

Lake Huron Sinkhole Photosynthetic Microbial Mats Metagenome

Supplemental Content

Related information

LinkOut to external resources

Recent activity