freshwater metagenome (ID 663590) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA663590 ID: 663590

freshwater metagenome

Cyanobacterial bloom metagenome

Metagenome sequences and genomes associated with Cyanobacteria blooms from 2018 in Lake Superior. More...

Accession	PRJNA663590
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	freshwater metagenome[Taxonomy ID: 449393] unclassified sequences; metagenomes; ecological metagenomes; freshwater metagenome
Submission	Registration date: 3-Jan-2021 University of Minnesota Duluth
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	91
SRA Experiments	5
Other datasets
BioSample	96
Assembly	91

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Total

91
91

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_016462105.1	JAEMTV000000000	SAMN16655446	SupBloom_Metag_058	Acetobacteraceae bacterium
GCA_016462055.1	JAEMTX000000000	SAMN16655448	SupBloom_Metag_017	Acidimicrobiia bacterium
GCA_016462405.1	JAEMTH000000000	SAMN16655432	SupBloom_Metag_001	Acidimicrobiia bacterium
GCA_016462285.1	JAEMTN000000000	SAMN16655438	SupBloom_Metag_004	Acidimicrobiia bacterium
GCA_016463815.1	JAEMQN000000000	SAMN16655360	SupBloom_Metag_002	Acidimicrobiia bacterium
GCA_016462875.1	JAEMSJ000000000	SAMN16655408	SupBloom_Metag_003	Acidimicrobiia bacterium
GCA_016463235.1	JAEMRR000000000	SAMN16655390	SupBloom_Metag_080	Acinetobacter sp.
GCA_016462135.1	JAEMTU000000000	SAMN16655445	SupBloom_Metag_088	Akkermansiaceae bacterium
GCA_016462475.1	JAEMTD000000000	SAMN16655428	SupBloom_Metag_091	Akkermansiaceae bacterium
GCA_016463145.1	JAEMRV000000000	SAMN16655394	SupBloom_Metag_089	Akkermansiaceae bacterium
GCA_016462965.1	JAEMSF000000000	SAMN16655404	SupBloom_Metag_090	Akkermansiaceae bacterium
GCA_016463205.1	JAEMRS000000000	SAMN16655391	SupBloom_Metag_047	Bacteroidia bacterium
GCA_016463335.1	JAEMRM000000000	SAMN16655385	SupBloom_Metag_020	Blastococcus sp.
GCA_016462955.1	JAEMSD000000000	SAMN16655402	SupBloom_Metag_066	Bradyrhizobium sp.
GCA_016462205.1	JAEMTS000000000	SAMN16655443	SupBloom_Metag_062	Brevundimonas sp.
GCA_016463295.1	JAEMRO000000000	SAMN16655387	SupBloom_Metag_061	Brevundimonas sp.
GCA_016463485.1	JAEMRD000000000	SAMN16655376	SupBloom_Metag_060	Brevundimonas sp.
GCA_016463795.1	JAEMQP000000000	SAMN16655362	SupBloom_Metag_063	Brevundimonas sp.
GCA_016462365.1	JAEMTI000000000	SAMN16655433	SupBloom_Metag_074	Burkholderiaceae bacterium
GCA_016463655.1	JAEMQW000000000	SAMN16655369	SupBloom_Metag_065	Candidatus Fonsibacter sp.
GCA_016463095.1	JAEMSA000000000	SAMN16655399	SupBloom_Metag_030	Candidatus Nanopelagicales bacterium
GCA_016462215.1	JAEMTO000000000	SAMN16655439	SupBloom_Metag_029	Candidatus Nanopelagicales bacterium
GCA_016462445.1	JAEMTE000000000	SAMN16655429	SupBloom_Metag_032	Candidatus Nanopelagicus sp.
GCA_016463855.1	JAEMQO000000000	SAMN16655361	SupBloom_Metag_031	Candidatus Nanopelagicus sp.
GCA_016463555.1	JAEMRB000000000	SAMN16655374	SupBloom_Metag_048	Chloroflexota bacterium
GCA_016462725.1	JAEMSP000000000	SAMN16655414	SupBloom_Metag_049	Chloroflexota bacterium
GCA_016462525.1	JAEMTB000000000	SAMN16655426	SupBloom_Metag_050	Chloroflexota bacterium
GCA_016462345.1	JAEMTK000000000	SAMN16655435	SupBloom_Metag_084	Chthoniobacterales bacterium
GCA_016462315.1	JAEMTL000000000	SAMN16655436	SupBloom_Metag_085	Chthoniobacterales bacterium
GCA_016462925.1	JAEMSH000000000	SAMN16655406	SupBloom_Metag_086	Chthoniobacterales bacterium
GCA_016462165.1	JAEMTT000000000	SAMN16655444	SB001	Dolichospermum sp.
GCA_016463605.1	JAEMQY000000000	SAMN16655371	SupBloom_Metag_055	Gemmataceae bacterium
GCA_016463175.1	JAEMRU000000000	SAMN16655393	SupBloom_Metag_056	Gemmataceae bacterium
GCA_016462255.1	JAEMTP000000000	SAMN16655440	SupBloom_Metag_054	Gemmataceae bacterium
GCA_016462605.1	JAEMSW000000000	SAMN16655421	SupBloom_Metag_057	Gemmataceae bacterium
GCA_016462505.1	JAEMTC000000000	SAMN16655427	SupBloom_Metag_016	Ilumatobacteraceae bacterium
GCA_016462185.1	JAEMTQ000000000	SAMN16655441	SupBloom_Metag_007	Ilumatobacteraceae bacterium
GCA_016463165.1	JAEMRW000000000	SAMN16655395	SupBloom_Metag_011	Ilumatobacteraceae bacterium
GCA_016463105.1	JAEMRY000000000	SAMN16655397	SupBloom_Metag_009	Ilumatobacteraceae bacterium
GCA_016462815.1	JAEMSM000000000	SAMN16655411	SupBloom_Metag_015	Ilumatobacteraceae bacterium
GCA_016462805.1	JAEMSN000000000	SAMN16655412	SupBloom_Metag_012	Ilumatobacteraceae bacterium
GCA_016463065.1	JAEMRX000000000	SAMN16655396	SupBloom_Metag_008	Ilumatobacteraceae bacterium
GCA_016463685.1	JAEMQT000000000	SAMN16655366	SupBloom_Metag_010	Ilumatobacteraceae bacterium
GCA_016463545.1	JAEMRC000000000	SAMN16655375	SupBloom_Metag_014	Ilumatobacteraceae bacterium
GCA_016463585.1	JAEMRA000000000	SAMN16655373	SupBloom_Metag_013	Ilumatobacteraceae bacterium
GCA_016463445.1	JAEMRH000000000	SAMN16655380	SupBloom_Metag_006	Ilumatobacteraceae bacterium
GCA_016463775.1	JAEMQQ000000000	SAMN16655363	SupBloom_Metag_005	Ilumatobacteraceae bacterium
GCA_016463265.1	JAEMRP000000000	SAMN16655388	SupBloom_Metag_018	Microbacteriaceae bacterium
GCA_016462545.1	JAEMTA000000000	SAMN16655425	SupBloom_Metag_024	Mycolicibacterium sp.
GCA_016463325.1	JAEMRN000000000	SAMN16655386	SupBloom_Metag_021	Mycolicibacterium sp.
GCA_016462945.1	JAEMSG000000000	SAMN16655405	SupBloom_Metag_022	Mycolicibacterium sp.
GCA_016462735.1	JAEMSR000000000	SAMN16655416	SupBloom_Metag_023	Mycolicibacterium sp.
GCA_016463045.1	JAEMSB000000000	SAMN16655400	SupBloom_Metag_059	Niveispirillum sp.
GCA_016463845.1	JAEMQM000000000	SAMN16655359	SupBloom_Metag_034	Nocardioides sp.
GCA_016462705.1	JAEMSS000000000	SAMN16655417	SupBloom_Metag_033	Nocardioides sp.
GCA_016463705.1	JAEMQU000000000	SAMN16655367	SupBloom_Metag_087	Opitutales bacterium
GCA_016463375.1	JAEMRK000000000	SAMN16655383	SupBloom_Metag_083	Parachlamydiales bacterium
GCA_016463085.1	JAEMRZ000000000	SAMN16655398	SupBloom_Metag_064	Phenylobacterium sp.
GCA_016462905.1	JAEMSI000000000	SAMN16655407	SupBloom_Metag_077	Polynucleobacter sp.
GCA_016463695.1	JAEMQV000000000	SAMN16655368	SupBloom_Metag_075	Polynucleobacter sp.
GCA_016463505.1	JAEMRE000000000	SAMN16655377	SupBloom_Metag_076	Polynucleobacter sp.
GCA_016462755.1	JAEMSQ000000000	SAMN16655415	SupBloom_Metag_081	Pseudomonas sp.
GCA_016462675.1	JAEMST000000000	SAMN16655418	SupBloom_Metag_027	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
GCA_016462425.1	JAEMTG000000000	SAMN16655431	SupBloom_Metag_026	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
GCA_016463425.1	JAEMRI000000000	SAMN16655381	SupBloom_Metag_025	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
GCA_016463015.1	JAEMSC000000000	SAMN16655401	SupBloom_Metag_079	Rhodoferax sp.
GCA_016463455.1	JAEMRG000000000	SAMN16655379	SupBloom_Metag_078	Rhodoferax sp.
GCA_016462375.1	JAEMTJ000000000	SAMN16655434	SupBloom_Metag_019	Rhodoluna sp.
GCA_016462245.1	JAEMTR000000000	SAMN16655442	SupBloom_Metag_039	Solirubrobacteraceae bacterium
GCA_016462555.1	JAEMSZ000000000	SAMN16655424	SupBloom_Metag_043	Solirubrobacteraceae bacterium
GCA_016462625.1	JAEMSV000000000	SAMN16655420	SupBloom_Metag_042	Solirubrobacteraceae bacterium
GCA_016463515.1	JAEMRF000000000	SAMN16655378	SupBloom_Metag_041	Solirubrobacteraceae bacterium
GCA_016463765.1	JAEMQS000000000	SAMN16655365	SupBloom_Metag_040	Solirubrobacteraceae bacterium
GCA_016463275.1	JAEMRQ000000000	SAMN16655389	SupBloom_Metag_070	Sphingobium sp.
GCA_016462845.1	JAEMSL000000000	SAMN16655410	SupBloom_Metag_071	Sphingobium sp.
GCA_016462305.1	JAEMTM000000000	SAMN16655437	SupBloom_Metag_067	Sphingomonadaceae bacterium
GCA_016463005.1	JAEMSE000000000	SAMN16655403	SupBloom_Metag_069	Sphingomonadaceae bacterium
GCA_016463885.1	JAEMQL000000000	SAMN16655358	SupBloom_Metag_068	Sphingomonadaceae bacterium
GCA_016463645.1	JAEMQX000000000	SAMN16655370	SupBloom_Metag_072	Sphingopyxis sp.
GCA_016463225.1	JAEMRT000000000	SAMN16655392	SupBloom_Metag_073	Sphingopyxis sp.
GCA_016463745.1	JAEMQR000000000	SAMN16655364	SupBloom_Metag_082	Stenotrophomonas sp.
GCA_016463595.1	JAEMQZ000000000	SAMN16655372	SupBloom_Metag_052	Synechococcales cyanobacterium SupBloom_Metag_052
GCA_016462855.1	JAEMSK000000000	SAMN16655409	SupBloom_Metag_053	Synechococcus sp. SupBloom_Metag_053
GCA_016463365.1	JAEMRJ000000000	SAMN16655382	SupBloom_Metag_044	Thermoleophilaceae bacterium
GCA_016462645.1	JAEMSX000000000	SAMN16655422	SupBloom_Metag_045	Thermoleophilaceae bacterium
GCA_016462535.1	JAEMSY000000000	SAMN16655423	SupBloom_Metag_046	Thermoleophilaceae bacterium
GCA_016462635.1	JAEMSU000000000	SAMN16655419	SupBloom_Metag_036	Thermoleophilia bacterium
GCA_016462095.1	JAEMTW000000000	SAMN16655447	SupBloom_Metag_035	Thermoleophilia bacterium
GCA_016462745.1	JAEMSO000000000	SAMN16655413	SupBloom_Metag_037	Thermoleophilia bacterium
GCA_016463385.1	JAEMRL000000000	SAMN16655384	SupBloom_Metag_038	Thermoleophilia bacterium
GCA_016462415.1	JAEMTF000000000	SAMN16655430	SupBloom_Metag_028	Williamsia sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	130
Data volume, Mbytes	43967

BioProject

Result Filters

Display Settings:

Send to:

freshwater metagenome

Cyanobacterial bloom metagenome

Supplemental Content

Related information

Recent activity